PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623940.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 367aa    MW: 39427.9 Da    PI: 7.5892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047318338323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cg + ++k++L rH+ +H
  XP_013623940.1 318 CNSCGVRLKQKEDLDRHMELH 338
                     ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-4315338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.265316343IPR007087Zinc finger, C2H2
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MFTEQNGRWT SSPRSLHDSE AYPSISATEN AGRKGVQPQS RVASSGTLLN SGSLSDRQML  60
LHDSTCIQNM PKQDVRKAHS LPQRDPRAXP AKSQSDSVRT LSSSSQNTNT HELPDASLVE  120
KFDSKQKAEN APGQANMSAL MEAVMKSGIL SNNSTCDAIK EESFQNEVVS PRALTLSAAS  180
KLKTVPTTGV TSAQTSNENS KASDPISSLL SSLVSKGLIS ASKTELPSLV QCAAPSISQD  240
HSSDHSTSSS LSVTVVPSDA QPLVSVKKGP STAPEVAPVG TAKSEPETLI GLKFRADKIR  300
ELHPAVISNL FDDLPHLCNS CGVRLKQKED LDRHMELHDK KLELSGTNSK CRVWFPKAED  360
WLSIQVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069192e-53AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAK2267572e-53AK226757.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-77-O21.
GenBankCP0026852e-53CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623940.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106329877
TrEMBLA0A078H5M21e-165A0A078H5M2_BRANA; BnaC04g08830D protein
STRINGBra005265.1-P1e-159(Brassica rapa)
STRINGBo4g034570.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM642333