PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623881.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 486aa    MW: 52523.1 Da    PI: 6.2952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05183204223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++C++ F++  +L  H++tH
  XP_013623881.1 183 ICNICKRGFPNANSLCAHQKTH 204
                     6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.847182209IPR007087Zinc finger, C2H2
SMARTSM003550.0077182204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280184206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSPSNSSSSP ETDQRLNDIV VAVQEKSTMT NPKQVSPQEV VPDVNNPKQV SPQEVVPEVN  60
NPKQVSPQEA VPGLNNPKQV SPQEIVPEVN NLKQASPQEV VHEMNNPKQV SPEEVVSQVN  120
SLKQVSPQEV VPDPNNPKQG LPQEVVPETE SKKTQRASFE LRVLRAINKL IKKYPSLDNH  180
ALICNICKRG FPNANSLCAH QKTHKHDLEL ERKLKQVEPI YSPPGPGQCF WKKHDNSYQG  240
TSNALSNDKH LEISRESIGG EGSSVRKMDI GEVIGYPSPP PYGNTNYGFS SGAPLVTHNY  300
NRPNLSDLNR SGFSFGPFKP NGGGNYPYPP FTMNPSYGSH DSKIMNSISQ PNTLGSCSNN  360
NNNNSSSQGA ISLELSLGPS KWMGGSNNNS SSLNGGVTGG GSMDLNMPVR PLVSRNHFYS  420
SYPLDSFTGN VPPPPPPSPA TSLSNDENVP GSSLISKEKN KAMVVDDDET DNGVTGGHDA  480
DKPAEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623881.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623881.10.0PREDICTED: uncharacterized protein LOC106329788
TrEMBLA0A078HZ000.0A0A078HZ00_BRANA; BnaC03g14630D protein
STRINGBra029029.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1875167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-13C2H2 family protein