PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 274aa MW: 31459 Da PI: 8.2386 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.7e-17 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ri n+ r +t+ kR++ ++KKA+E S+LC+++ ++i++++t XP_013623871.1 10 RIMNEKTRITTYRKRKECLFKKANEFSTLCGVNTCLIVYGPT 51 899*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.063 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-19 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.08E-25 | 2 | 82 | No hit | No description |
PRINTS | PR00404 | 8.3E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-16 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGRKMVKMAR IMNEKTRITT YRKRKECLFK KANEFSTLCG VNTCLIVYGP TRAGDERIDH 60 PELWPKDERK VREIITKYRD TASSSCIKTY SVQECLEKGK IKLEKEKYCP WDNKLEKCSL 120 NELYATFVTV CNKIQEAANR KQTFPDASWS THRDQLGLIG YNQPCLEQHQ LFPMSSMEQN 180 GFAFLPFLNQ MTSTSNTGEV ASFSNVTEPE MTQAMFYGSC SDGQYAPMVQ KTDYMEPVQW 240 GLGNSMFSNV KPFADYPMRF GQVNDLESSG KTPM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623871.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189542 | 0.0 | AC189542.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623871.1 | 0.0 | PREDICTED: uncharacterized protein LOC106329774 | ||||
TrEMBL | A0A078HH72 | 0.0 | A0A078HH72_BRANA; BnaA03g11270D protein | ||||
TrEMBL | A0A0D3B3B1 | 0.0 | A0A0D3B3B1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g021400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-134 | M-type_MADS family protein |