PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 133aa MW: 14124.6 Da PI: 6.495 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 73.9 | 2.4e-23 | 54 | 104 | 10 | 59 |
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 l+N Aa++Ggha+D C Efmps++ + +++++lkCaACgCH nF Rr++++ XP_013623869.1 54 LQNRAAAIGGHALDVCSEFMPSPTFTsSDPTSLKCAACGCHHNFNRRDPDD 104 78**********************99899******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 18.491 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-20 | 54 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.7E-18 | 54 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-13 | 54 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MLEVGAMDMT PKYPAKYPTN PKLRPRSNQL NQSPSATESS NAATTSTTTQ PPSLQNRAAA 60 IGGHALDVCS EFMPSPTFTS SDPTSLKCAA CGCHHNFNRR DPDDSSLTSA VAPPSLLTSS 120 TTAEIEYQPH TVN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623869.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623869.1 | 2e-93 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LHF0 | 1e-26 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A078FG71 | 4e-92 | A0A078FG71_BRANA; BnaC03g13900D protein | ||||
TrEMBL | A0A0D3B396 | 4e-92 | A0A0D3B396_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g021250.1 | 6e-93 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM26754 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 6e-27 | homeobox protein 34 |
Publications ? help Back to Top | |||
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