PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013623752.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 19710 Da PI: 5.5612 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k++s L H+++H XP_013623752.1 27 YKCKYCPKTYSKGQALGGHQNVH 49 9*******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.08E-7 | 24 | 55 | No hit | No description |
Pfam | PF13912 | 1.5E-6 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.822 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 27 | 53 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MLSSESSYGS DVSDDGIATE LMEQATYKCK YCPKTYSKGQ ALGGHQNVHK REREITKRQE 60 RAMLVSMNPP DPYPYPHPFP SQYALPSGFE QPRYIIDEPD NLHVVYNSSQ NPYQSVMAQP 120 HTQSLLPASS PVCLKLCLGV GSSSQDQTQT KEPNDATKDM AAEKEDHELS LSLSLKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013623752.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC241048 | 0.0 | AC241048.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058I10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623752.1 | 1e-129 | PREDICTED: uncharacterized protein LOC106329608 | ||||
TrEMBL | A0A0D3AZT3 | 1e-128 | A0A0D3AZT3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6R529 | 1e-128 | A0A3N6R529_BRACR; Uncharacterized protein | ||||
STRING | Bo3g003180.1 | 1e-128 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15741 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05120.1 | 9e-38 | C2H2 family protein |