PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623651.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 449aa    MW: 50220.4 Da    PI: 7.078
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10155183533
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                     k  rr+++NReAAr+sR+RKka++++Le 
  XP_013623651.1 155 KTLRRLAQNREAARKSRLRKKAYVQQLES 183
                     7789***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-9148199No hitNo description
SMARTSM003386.9E-8151234IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.749153197IPR004827Basic-leucine zipper domain
CDDcd147088.56E-22155207No hitNo description
PfamPF001701.1E-7155192IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.46E-7156197No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
PfamPF141441.7E-30243317IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQGHHQNHHQ QLSSASAMSS NGNFMNKDGY DLGEIDPSLF LYLDGQGHHD PSSTAPLPHH  60
HTTQNLAMRP PTSTLNIFPS QPMHIEPPPS STPNTDNTRL VAPSSSTRPS SEPSMDLTNH  120
SQFQLPQPSK SIKKEGNRKG PASSDYDIPK SSDPKTLRRL AQNREAARKS RLRKKAYVQQ  180
LESCRIKLSQ LEQEIQRARS QGVFFGGDQQ QGGLPTGPGN TSSEAAVFDM EYTRWQEEQQ  240
RLLTELRMAT QEHLAENELR MFVDNCLAHY DHLVNLKAMV AKTDVFHLIS GAWKSPAERC  300
FLWMGGFRPS EIIKVIVNQI EQLTEQQIVG ICGLQQSTQE AEEALSQGLE ALNQSLSDSI  360
VSDSLSPASA QFPPHLSNFM SHMSLALNKL SALEGFVLQA DNLRHQTIHR LNQLLTTRQE  420
ARCILAVAEY FHRLQALSSL WLARPRQDG
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in inflorescence apex and flowers. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623651.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327420.0HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623651.10.0PREDICTED: transcription factor TGA2-like isoform X2
SwissprotE3VNM40.0TGA10_ARATH; Transcription factor TGA10
TrEMBLA0A0D3B0210.0A0A0D3B021_BRAOL; Uncharacterized protein
STRINGBo3g004060.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein
Publications ? help Back to Top
  1. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]