PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23623.8 Da PI: 4.2599 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr +k +g+WvAeIr p++ r r++lg+f++ae+Aa+a +aa +l+g XP_013623518.1 5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRG 55 79*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 5 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.89E-28 | 5 | 65 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-21 | 6 | 64 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-30 | 6 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.707 | 6 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-29 | 6 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDSAE KAARAFDAAL YCLRGSGARF 60 NFPDNPPEIP GGRSLTPQEI QVAANRFASE ELLPPPPRQQ GSPSPSGDKS DERGGILARG 120 ETNVGGPTLG EVGEYNNYNN ENNSNGNDTT TYWPFLWEEN LLVSSMSEEL GTFYMEDSLQ 180 QQEPELSSDF YYDGAYVVED DFSHYNIWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 6 | 63 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623518.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623518.1 | 1e-154 | PREDICTED: ethylene-responsive transcription factor ERF016-like | ||||
Refseq | XP_022554489.1 | 1e-154 | ethylene-responsive transcription factor ERF016-like | ||||
Swissprot | Q9C591 | 4e-90 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A0A0D3B279 | 1e-153 | A0A0D3B279_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g015600.1 | 1e-154 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14167 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-82 | ERF family protein |