PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623496.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 519aa    MW: 57113.5 Da    PI: 7.2057
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.1e-29279337259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+Y+rCt+a gCpv+k+v+r+ae+ +++++tYeg+Hnh+
  XP_013623496.1 279 SDGCHWRKYGQKMAKGNPCPRAYFRCTMAvGCPVRKQVQRCAEERSILITTYEGNHNHP 337
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-32263339IPR003657WRKY domain
SuperFamilySSF1182906.67E-27271339IPR003657WRKY domain
PROSITE profilePS5081128.231273339IPR003657WRKY domain
SMARTSM007741.1E-35278338IPR003657WRKY domain
PfamPF031061.0E-25280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MFRFPVSLGG SHDNPKQPQS SDEQPHRAMM DEVDFFRSEK RDDQNIITDE TKRVHVKREN  60
SRVVDDDDRS TGINTGLNLL TAHTGSDESM VDDGLSVDME EKRSKIENVQ LREELKKAAE  120
EIQRLKEMLS QTTNNFNSLQ MQLVAVMRQQ EDHHHLAMTG SKDIANKRHE GSEMVPRQFI  180
ELGLPTAEVS SEERTTVRSR SPPSLLENSS SRQRGKRLLE REESPETQSN GWGNPNKVSK  240
HNASSSNDNV SAIDQSTAEA TMRKARVSVR ARSEAPTLSD GCHWRKYGQK MAKGNPCPRA  300
YFRCTMAVGC PVRKQVQRCA EERSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS  360
TTSSQDGLMH PTNLFARTML PCSSTMATIS ASAPFPTITL DLTESASNVN NQTNNNPLMQ  420
FPQRSGFTEL NQSGLPQMMG QALYYNQQQS KFSGLQIPTQ SLNAGESVSA ATAAIAANPN  480
FAAALAAALT SIINGPNNHK NGDSNTGNNN VRTSSVERQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20265341176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841100.0FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623496.10.0PREDICTED: probable WRKY transcription factor 42
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A0D3B8J00.0A0A0D3B8J0_BRAOL; Uncharacterized protein
STRINGBo3g048600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein