PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623415.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 574aa    MW: 61920.6 Da    PI: 7.7468
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.2e-083673992254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_013623415.1 367 HPYPTDTDKLVLAKHTGLSRNQVSNWFINARVR 399
                     89*****************************87 PP
2BELL109.71.7e-35222290472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e+ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lka+S+hF+cLk+ai++q+
  XP_013623415.1 222 EHGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKALSKHFKCLKTAITDQL 290
                     889***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.3E-63164288IPR006563POX domain
PfamPF075262.7E-34169287IPR006563POX domain
SMARTSM003893.2E-8343407IPR001356Homeobox domain
CDDcd000861.52E-10343404No hitNo description
SuperFamilySSF466894.71E-16345409IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-25347407IPR009057Homeodomain-like
PfamPF059201.8E-17360399IPR008422Homeobox KN domain
PROSITE profilePS5007111.24362403IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MADAYEPYHI LQQSRRDKLR IPSLDSHFHF NHPPPPSSSG GGLFPFTDSD YLAAGGFHSN  60
NNSNHISNPS HSNFMGFLGG PSSSSSAAVT VAGDPSFNAE LSSGDVLVFR PEPLSLSLSS  120
HPRLAYDLVV PGVASFGFCR SASEAAAAAV TVASRSSGPL GPCTGYASIL KGSRFLKPAQ  180
MLLDEFCNVA LGVYTDKVMD DEDDSSLLFD PTVETLCGVS GEHGKKKSKL ISMLDEVYKR  240
YKQYYEQLQA VMGSFECVAG LGHAAPYASL TLKALSKHFK CLKTAITDQL QFSTNNKRQQ  300
QCGHVMDSDN KTDSLRFGGS DSGRGLCSAG QRHGFPDHHA PVWRPHRGLP ERAVAVLRAW  360
LFDHFLHPYP TDTDKLVLAK HTGLSRNQVS NWFINARVRV WKPMVEEIHL LETRQSQRSS  420
SSSWRDERST ADFPDNNNDN PSSSSAQQRA NNNSSPARRV RNHDVHGPNS NNNNNFMNAG  480
SGGSGGGAVS FSYGIASSNI PGISSSTNGG VSLTLGLHHQ IGLSEPFPMT TAQRLGLDGG  540
SSGGGGGGYD RQNRQFGRDF IGGSNHQFLH DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16349407563Homeobox protein Meis2
4xrm_B4e-16349407563Homeobox protein Meis2
5bng_A3e-16349407159Homeobox protein Meis2
5bng_B3e-16349407159Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623415.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_013746256.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM80.0BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0D3AZD40.0A0A0D3AZD4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AID70.0A0A3P6AID7_BRAOL; Uncharacterized protein
STRINGBo3g001690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.10.0TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]