PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623320.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 340aa    MW: 37888.9 Da    PI: 6.9643
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.83.6e-39135209175
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                     +Cq++gCe dls+ak+yhr+h+vC+ hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL +hn+rrrk
  XP_013623320.1 135 RCQIDGCELDLSSAKDYHRKHRVCDNHSKSPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLTHHNARRRK 209
                     6*************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.1E-33128197IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.171133210IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-36134210IPR004333Transcription factor, SBP-box
PfamPF031104.0E-30136209IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDCNMASPTW DWDHLIMSNP SETEGEGIES MFPCFDGLEK VSSGSPSGFW HSQSTSTNSS  60
SPKVKQTNLA SESSPGDSCS NVDSVYVKAS TAAESDLCLE LGKQTYSEEF WCSDNNDLSA  120
VSMNARKKQS MQVPRCQIDG CELDLSSAKD YHRKHRVCDN HSKSPKVTVG GLERRFCQQC  180
SRLHAVSEFD EKKRSCRKRL THHNARRRKL PGMFPLNPER VCNRRQHTNM LWDELSLNTK  240
SEETFTQIES GFTLSFQRGH GRPDEQVVAG SSRSLSPYQT SGGFQLPSKG VGEYSGGLNE  300
SQDFYSALSL LSTSSDSRGT KHNPMVESQP IHGTFPTHFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-251362091184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191208KKRSCRKRLTHHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623320.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623320.10.0PREDICTED: squamosa promoter-binding-like protein 10
RefseqXP_013623321.10.0PREDICTED: squamosa promoter-binding-like protein 10
SwissprotQ8S9L01e-155SPL10_ARATH; Squamosa promoter-binding-like protein 10
TrEMBLA0A0D3BID70.0A0A0D3BID7_BRAOL; Uncharacterized protein
STRINGBo3g141480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-148squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu N,Niu QW,Ng KH,Chua NH
    The role of miR156/SPLs modules in Arabidopsis lateral root development.
    Plant J., 2015. 83(4): p. 673-85
    [PMID:26096676]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Gao R,Wang Y,Gruber MY,Hannoufa A
    miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
    Front Plant Sci, 2017. 8: p. 2226
    [PMID:29354153]
  5. Dotto M,Gómez MS,Soto MS,Casati P
    UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
    Plant Cell Environ., 2018. 41(6): p. 1394-1406
    [PMID:29447428]