PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 391aa MW: 44766.8 Da PI: 4.6924 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.9 | 2.2e-35 | 61 | 153 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed+++++++sws+++nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++k F +g+k+ll+k XP_013623226.1 61 FLTKTYDLVEDSRTNDVVSWSQDKNSFVVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANKGFLRGQKHLLKK 146 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k++ XP_013623226.1 147 ITRRKTN 153 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.44E-35 | 56 | 150 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.9E-38 | 57 | 150 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-57 | 57 | 150 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 61 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.8E-31 | 61 | 150 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 100 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-18 | 112 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MDRSYTCIKE VFPTGINDSP SPPSSSTSSY LHSTSMAPND PATLNSPQPI EGLHESGPPP 60 FLTKTYDLVE DSRTNDVVSW SQDKNSFVVW DPQAFSMTLL PRFFKHNNFS SFVRQLNTYG 120 FRKVNPDRWE FANKGFLRGQ KHLLKKITRR KTNNNNQMQP PESSSQQQSL DNRCIEVGRY 180 GLDGEMDSLR RDKQVLMMEL VKLRKEQQST KMYLTLTEAK LKKTESKQHQ MMSFLARAMQ 240 NPDFLQQLME HKDKSKDMEE AIRKKRQRTI DQGTSDVVNV EDCDVNVGGG SSSRFVDMKQ 300 DIYGDMTEFD MSELDGLAMD IEGLGGQFTG EEVLDVDKRE QEGFQNENNE SYGEDFLEGL 360 FKEDQDIDFE RDGENVDVLI EQLGYLGSSS H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 52 | 152 | 17 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 52 | 152 | 17 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 52 | 152 | 17 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 264 | KDKSKDMEEAIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623226.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189327 | 0.0 | AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623226.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 0.0 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A0D3BCU0 | 0.0 | A0A0D3BCU0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g081420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-178 | heat shock transcription factor A6B |