PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 426aa MW: 47704.2 Da PI: 6.0693 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.5 | 2.3e-31 | 224 | 278 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_013623194.1 224 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 278 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.961 | 221 | 281 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-29 | 222 | 279 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.31E-16 | 223 | 279 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-24 | 224 | 279 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-8 | 226 | 277 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-22 | 314 | 361 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MNSHRLVSTA QDECNKGLHQ PCSSSLSPVH NFLNLQPENR NSPFIRSQSP DSPWPKNSPQ 60 GTFSRSSTFC TNLYISSSST SDAHKHLGNT LPFLPDPSTN IQPPSGVESA RSPSIFSEDM 120 SNPVDGDNTL VKDFFNLSGD ACSDRAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS 180 ETPRLDIYET PLASSSNPVT GMSQSQRCVT GAVSTGSAAA SNHKPRMRWT PELHESFLKS 240 VDKLEGPEKA TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK HIPEKKEEKK NVNTEEKKLA 300 LSNSEAVERK KGAMQLTEAL RMQMEVQKQL HEQLEVQRVL QLRIEEHAKY LEKMLEEQRK 360 TGMLMSSSSS SSQTLLSDCQ NMSKTEVSSL SQPKNIASET EDDKCESPQK RRRVENNTES 420 EDPPER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 224 | 281 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 409 | 413 | KRRRV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623194.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623194.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X2 | ||||
Swissprot | Q949U2 | 0.0 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A0D3BB17 | 0.0 | A0A0D3BB17_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BBX1 | 0.0 | A0A3P6BBX1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g065290.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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