PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013623193.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 427aa MW: 47833.3 Da PI: 5.9289

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013623193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.5	2.3e-31	225	279	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_013623193.1 225 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 279 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.961	222	282	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-29	223	280	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-16	224	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-24	225	280	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-8	227	278	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-22	315	362	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MNSHRLVSTA QDECNKGLHQ PCSSSLSPVH NFLNLQPENR NSPFIRSQSP DSPWPKNSPQ 60 GTFSRSSTFC TNLYISSSST SDAHKHLGNT LPFLPDPSTN IQPPSGVESA RSPSIFSEDM 120 SNPVDGDNTL VKDFFNLSGD ACSDRAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS 180 ETPRLDEIYE TPLASSSNPV TGMSQSQRCV TGAVSTGSAA ASNHKPRMRW TPELHESFLK 240 SVDKLEGPEK ATPKAVLKLM NVEGLTIYHV KSHLQKYRLA KHIPEKKEEK KNVNTEEKKL 300 ALSNSEAVER KKGAMQLTEA LRMQMEVQKQ LHEQLEVQRV LQLRIEEHAK YLEKMLEEQR 360 KTGMLMSSSS SSSQTLLSDC QNMSKTEVSS LSQPKNIASE TEDDKCESPQ KRRRVENNTE 420 SEDPPER

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MNSHRLVSTA QDECNKGLHQ PCSSSLSPVH NFLNLQPENR NSPFIRSQSP DSPWPKNSPQ  60
GTFSRSSTFC TNLYISSSST SDAHKHLGNT LPFLPDPSTN IQPPSGVESA RSPSIFSEDM  120
SNPVDGDNTL VKDFFNLSGD ACSDRAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS  180
ETPRLDEIYE TPLASSSNPV TGMSQSQRCV TGAVSTGSAA ASNHKPRMRW TPELHESFLK  240
SVDKLEGPEK ATPKAVLKLM NVEGLTIYHV KSHLQKYRLA KHIPEKKEEK KNVNTEEKKL  300
ALSNSEAVER KKGAMQLTEA LRMQMEVQKQ LHEQLEVQRV LQLRIEEHAK YLEKMLEEQR  360
KTGMLMSSSS SSSQTLLSDC QNMSKTEVSS LSQPKNIASE TEDDKCESPQ KRRRVENNTE  420
SEDPPER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	414	KRRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013623193.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623193.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X1
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A0D3BB17	0.0	A0A0D3BB17_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BBX1	0.0	A0A3P6BBX1_BRAOL; Uncharacterized protein
STRING	Bo3g065290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]