PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013623172.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 422aa MW: 46353.1 Da PI: 6.3047

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013623172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	7.8e-05	323	361	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_013623172.1 323 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 361 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-10	321	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.32E-5	321	365	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-7	325	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH QWSPGGISLN CVSLSHNFNN 60 EMLNTRDENN NNNNSTSECM SLSNIHNHSL IQQQDFPLQW THNESSYHHH EGLHKIKEEL 120 SSATTSDHQQ GMPRFTDMLN SPVITNYLKI NEHKDYTEKL LLNTISSGFP INGDYSNSLP 180 SSSSSSSPSS QSHRGSFSQI YPSVNISSLS ESQRISNIPR PFDMNMQVLD GRLFEGNVLV 240 PPLNSQEIRG NFTPFGLPFH HHLQQTLHHP SSSPSHQMEI YSNEPQASEG KRHNFVMAPK 300 AGETASKKPR VESRSSCPPF KVRKEKLGDR IAALQQLVSP FGKTDTASVL MEAIGYIKFL 360 QSQIEGSIPQ EGDEEETRDL RSRGLCLVPL SCMTYVTGDG GDGGGGVGSG FWPTPPGFGG 420 GT

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MDSANLHQLQ DQLQLVGSSS SSSSLDNNSH PSCYEASSVH QWSPGGISLN CVSLSHNFNN  60
EMLNTRDENN NNNNSTSECM SLSNIHNHSL IQQQDFPLQW THNESSYHHH EGLHKIKEEL  120
SSATTSDHQQ GMPRFTDMLN SPVITNYLKI NEHKDYTEKL LLNTISSGFP INGDYSNSLP  180
SSSSSSSPSS QSHRGSFSQI YPSVNISSLS ESQRISNIPR PFDMNMQVLD GRLFEGNVLV  240
PPLNSQEIRG NFTPFGLPFH HHLQQTLHHP SSSPSHQMEI YSNEPQASEG KRHNFVMAPK  300
AGETASKKPR VESRSSCPPF KVRKEKLGDR IAALQQLVSP FGKTDTASVL MEAIGYIKFL  360
QSQIEGSIPQ EGDEEETRDL RSRGLCLVPL SCMTYVTGDG GDGGGGVGSG FWPTPPGFGG  420
GT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013623172.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623172.1	0.0	PREDICTED: transcription factor bHLH110 isoform X2
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A0D3BIG7	0.0	A0A0D3BIG7_BRAOL; Uncharacterized protein
STRING	Bo3g141780.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]