PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623046.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 532aa    MW: 59428.4 Da    PI: 9.7812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07441489247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+ E++++  +vk+ +       Wk  ++ ++ +R++k+++s+++++
   XP_013623046.1 441 KSWTAKEEQKFESLVKKIPLSscdgFWKYASKAFP-RRSEKDLISYYYNV 489
                      58*****************99**************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004334.9E-51354IPR001241DNA topoisomerase, type IIA
PRINTSPR011592.9E-113961IPR000565DNA topoisomerase, type IIA, subunit B
Gene3DG3DSA:3.30.230.101.6E-4339206IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
CDDcd008224.16E-5139207No hitNo description
PfamPF002044.8E-4141206IPR013506DNA topoisomerase, type IIA, subunit B, domain 2
SuperFamilySSF542113.41E-3444206IPR020568Ribosomal protein S5 domain 2-type fold
PRINTSPR011592.9E-11129145IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR011592.9E-11176190IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR011592.9E-11190210IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR011592.9E-11413425IPR000565DNA topoisomerase, type IIA, subunit B
SMARTSM007170.0088439492IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-6440497IPR009057Homeodomain-like
CDDcd001678.17E-5442490No hitNo description
PROSITE profilePS500906.086442490IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.3E-4442489IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006265Biological ProcessDNA topological change
GO:0003677Molecular FunctionDNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSCGTVRKVT RQDIKVVKAS MEKEDNDDNL YKDCVKGGGG ASVYITWLIG DKRPLHDVMG  60
FKKEINDIKI DIALQWYVDV YSDTVLGYAN GIHTIDGGTH IDGAKASITR TINTLGKKRK  120
FVKDLDLSGE HIREGLTCIV AVVVTKPEFV DQTKKLGNPK IREIVDKSVQ EYLTEYFELH  180
PDVFESIYTK SFKAYQKALA LKRARKVILT PRTVPQNLTN SSSGKFEIFI AIGESSGGAA  240
KHGDNDRRFQ SKRTLEQPLS NGAAVSTAPP GRSLENTIDS RVDKKRQKVV PSSQHPSSSS  300
RQTVAAASNR PNRKDVGAKT LKGVSTGSNK TKPVIPVGPG FQAEIPIWIA STKKGKFYGS  360
PGDSDTLRWI GTAVWPTYSL KKKDHHKKVG EGRPDSCSCA NPGSVDCAKL HIKEARELLE  420
KETDDAFYTW KFDEMGEVGS KSWTAKEEQK FESLVKKIPL SSCDGFWKYA SKAFPRRSEK  480
DLISYYYNVF LNHRNTDDDH CGDFLADHRH ARRRRGAITS MHYENLRIDE TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6gau_A3e-2739277256501DNA gyrase subunit B,DNA gyrase subunit A
6gau_B3e-2739277256501DNA gyrase subunit B,DNA gyrase subunit A
6gav_A3e-2739277256501DNA gyrase subunit B,DNA gyrase subunit A
6gav_B3e-2739277256501DNA gyrase subunit B,DNA gyrase subunit A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623046.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623046.10.0PREDICTED: uncharacterized protein LOC106329026 isoform X2
TrEMBLA0A3P6AJ000.0A0A3P6AJ00_BRAOL; DNA topoisomerase 2
STRINGBo3g002620.10.0(Brassica oleracea)