PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623043.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 533aa    MW: 59556.5 Da    PI: 9.8251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07442490247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+ E++++  +vk+ +       Wk  ++ ++ +R++k+++s+++++
   XP_013623043.1 442 KSWTAKEEQKFESLVKKIPLSscdgFWKYASKAFP-RRSEKDLISYYYNV 490
                      58*****************99**************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004331.8E-51355IPR001241DNA topoisomerase, type IIA
Gene3DG3DSA:3.30.230.102.5E-4639207IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
CDDcd008222.34E-5239208No hitNo description
PRINTSPR011592.9E-113961IPR000565DNA topoisomerase, type IIA, subunit B
PfamPF002043.9E-4341207IPR013506DNA topoisomerase, type IIA, subunit B, domain 2
SuperFamilySSF542113.98E-3744207IPR020568Ribosomal protein S5 domain 2-type fold
PRINTSPR011592.9E-11129145IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR011592.9E-11177191IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR011592.9E-11191211IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR011592.9E-11414426IPR000565DNA topoisomerase, type IIA, subunit B
SMARTSM007170.0088440493IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-6441498IPR009057Homeodomain-like
PROSITE profilePS500906.086443491IPR017877Myb-like domain
CDDcd001678.34E-5443491No hitNo description
Gene3DG3DSA:1.10.10.607.3E-4443490IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006265Biological ProcessDNA topological change
GO:0003677Molecular FunctionDNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSCGTVRKVT RQDIKVVKAS MEKEDNDDNL YKDCVKGGGG ASVYITWLIG DKRPLHDVMG  60
FKKEINDIKI DIALQWYVDV YSDTVLGYAN GIHTIDGGTH IDGAKASITR TINTLGKKRK  120
FVKDLDLSGE HIREGLTCIV AVVVTKPEFV DQTKKKLGNP KIREIVDKSV QEYLTEYFEL  180
HPDVFESIYT KSFKAYQKAL ALKRARKVIL TPRTVPQNLT NSSSGKFEIF IAIGESSGGA  240
AKHGDNDRRF QSKRTLEQPL SNGAAVSTAP PGRSLENTID SRVDKKRQKV VPSSQHPSSS  300
SRQTVAAASN RPNRKDVGAK TLKGVSTGSN KTKPVIPVGP GFQAEIPIWI ASTKKGKFYG  360
SPGDSDTLRW IGTAVWPTYS LKKKDHHKKV GEGRPDSCSC ANPGSVDCAK LHIKEARELL  420
EKETDDAFYT WKFDEMGEVG SKSWTAKEEQ KFESLVKKIP LSSCDGFWKY ASKAFPRRSE  480
KDLISYYYNV FLNHRNTDDD HCGDFLADHR HARRRRGAIT SMHYENLRID ETA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6gau_A1e-2839278256501DNA gyrase subunit B,DNA gyrase subunit A
6gau_B1e-2839278256501DNA gyrase subunit B,DNA gyrase subunit A
6gav_A1e-2839278256501DNA gyrase subunit B,DNA gyrase subunit A
6gav_B1e-2839278256501DNA gyrase subunit B,DNA gyrase subunit A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623043.10.0PREDICTED: uncharacterized protein LOC106329026 isoform X1
RefseqXP_013623044.10.0PREDICTED: uncharacterized protein LOC106329026 isoform X1
RefseqXP_013623045.10.0PREDICTED: uncharacterized protein LOC106329026 isoform X1
TrEMBLA0A3P6AJ000.0A0A3P6AJ00_BRAOL; DNA topoisomerase 2
STRINGBo3g002620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1163945