PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 170aa MW: 18647.7 Da PI: 5.7708 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.4 | 3.1e-13 | 27 | 84 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ +r+ +NRe+ArrsR RK++ i+ L+ +k+L++ N++ l ++++ k ++e XP_013623036.1 27 RKRKRMLSNRESARRSRMRKQKHIDDLTAQIKQLSSDNRQILTSLTVTSQLYMKIQAE 84 57899*********************************99887777777777666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.0E-16 | 23 | 87 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.1E-10 | 25 | 70 | No hit | No description |
PROSITE profile | PS50217 | 10.208 | 25 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.29E-12 | 27 | 78 | No hit | No description |
Pfam | PF00170 | 3.5E-10 | 27 | 77 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.48E-21 | 28 | 79 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 30 | 45 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MASSSSTYRS SSSSDGGNPN AVAVDERKRK RMLSNRESAR RSRMRKQKHI DDLTAQIKQL 60 SSDNRQILTS LTVTSQLYMK IQAENSILTA QMAELSSRLE SLNEIVDLVT TTNGAGFGGG 120 VDMIDGCGFD DRTVGINSDG FYDDMMSGVN HWGGSVYSNQ PIMANDINMY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 47 | RKRKRMLSNRESARRSRMRKQK |
2 | 39 | 46 | RRSRMRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot meristem during vegetative to reproductive phase transition. {ECO:0000269|PubMed:22319055}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353485 | 1e-160 | AK353485.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-P17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623036.1 | 1e-123 | PREDICTED: ocs element-binding factor 1-like | ||||
Swissprot | Q9SI15 | 4e-89 | BZIP2_ARATH; bZIP transcription factor 2 | ||||
TrEMBL | A0A0D3BEF3 | 1e-121 | A0A0D3BEF3_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g093980.1 | 1e-122 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18160.1 | 2e-90 | basic leucine-zipper 2 |
Publications ? help Back to Top | |||
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