PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622999.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 307aa    MW: 34402.6 Da    PI: 8.2313
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.51e-2944138289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasn 84 
                      g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i  l+              s           s s++  
  XP_013622999.1  44 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSISNLNPIdtnfdqtlslskS-----------STSES-- 125
                     689***********************************************************994444443333221...........11111.. PP

             TCP  85 sssg...........k 89 
                        +           k
  XP_013622999.1 126 ---SllslsrtesrgK 138
                     ...0111111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-2945152IPR005333Transcription factor, TCP
PROSITE profilePS5136930.42446104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEDDDDIETQ QQTSRKLQRL SSDKTEMRDW SNPSSRIIRV SRASGGKDRH SKVLTSKGLR  60
DRRIRLSVAT AIQFYDLQDR LGFDQPSKAV EWLINAASDS ISNLNPIDTN FDQTLSLSKS  120
STSESSLLSL SRTESRGKAR DKDKDLQSSF TQLLTRGFDE PNRSWTGGGS TDCFNPVQLM  180
PNSNSLNHRQ EPSLNHHSQN QYSFLPNYNF GISSSDSPGE AGCYSSRGTL QSNSQPLFLN  240
NNKNINQRSI SSSSSSSSPM DSQSISFFMA PPLHHHSPQL PEAFDGRLYL YYGEGNRSSD  300
DKGKERR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1951104154Putative transcription factor PCF6
5zkt_B2e-1951104154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531566e-63AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622999.10.0PREDICTED: transcription factor TCP24
RefseqXP_013623000.10.0PREDICTED: transcription factor TCP24
RefseqXP_013623001.10.0PREDICTED: transcription factor TCP24
SwissprotQ9C7581e-127TCP24_ARATH; Transcription factor TCP24
TrEMBLA0A0D3BJ190.0A0A0D3BJ19_BRAOL; Uncharacterized protein
STRINGBo3g147760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-119TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]