PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622850.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 427aa    MW: 45266.2 Da    PI: 7.1608
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-124469227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H+p
  XP_013622850.1 44 DEPDCVYYLRTGVCGYGSRCQFNHPP 69
                    6899********************97 PP
2zf-CCCH37.83.2e-1291115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f+rtG+Ck+G++Ck++H++
  XP_013622850.1  91 QPVCQHFMRTGECKFGASCKYHHPR 115
                     589********************96 PP
3zf-CCCH40.83.7e-13142166226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++CkF+H+
  XP_013622850.1 142 GEKECPYYMRTGQCKFGSTCKFHHP 166
                     7899********************9 PP
4zf-CCCH36.67.5e-12287313127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C +f++tG Ck+G +C+++H++
  XP_013622850.1 287 PGQPECTYFMKTGDCKFGTSCRYHHPM 313
                     5789*********************95 PP
5zf-CCCH35.31.9e-11333359127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t++C++fa+ G+Ck G+ CkF H++
  XP_013622850.1 333 PGTAPCSHFAQHGICKLGPACKFDHSM 359
                     68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-54269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1924270IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-84469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-64670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-64868IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86388116IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-789115IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-1092115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-593115IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-7140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854140168IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-11142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5146165IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225286314IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-9288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6290314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4292312IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014332360IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9333358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5333360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4335358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEQQGGTDEE GSRSDPGTET GIEASMSRLG LRGGGNESYP ERPDEPDCVY YLRTGVCGYG  60
SRCQFNHPPN RPPVLGGLRA EAGEFPERME QPVCQHFMRT GECKFGASCK YHHPRQGGGG  120
GGGDSVTSPI SFNHMGFPLR PGEKECPYYM RTGQCKFGST CKFHHPVPPG DQVPSQQQLS  180
TGPAIYPPLQ SQPSQQFGVV VPRPQLLPGS YVQNPYGTYS QMVLPPGMVS YSGWNPYQPS  240
VSAIPSPGTQ PSMGPSSVYG TTPLSPSAPA YQSGPSSNKE HSFPQRPGQP ECTYFMKTGD  300
CKFGTSCRYH HPMEAAASPK GVALSNIGLP LRPGTAPCSH FAQHGICKLG PACKFDHSMT  360
SSLNDQGTEL HSSSSIKPTT TTSGGGSETT GAAGVSSSSS MTVGVSHSEP TERKDGDSVS  420
IEVKTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622850.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0D3B1T90.0A0A0D3B1T9_BRAOL; Uncharacterized protein
STRINGBo3g013210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]