PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 306aa MW: 35000.8 Da PI: 6.917 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.5 | 9.2e-11 | 180 | 223 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + XP_013622837.1 180 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQSEVSVLSPR 223 8999********************************98777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.6E-13 | 176 | 240 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.657 | 178 | 230 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-11 | 180 | 231 | No hit | No description |
SuperFamily | SSF57959 | 3.3E-11 | 180 | 234 | No hit | No description |
Pfam | PF00170 | 4.4E-9 | 180 | 223 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 7.71E-23 | 181 | 231 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 183 | 198 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAQLPPKIPN MTPHWPDFSQ KLSHFSTAAA SSAVQNPSWV DEFLDFSACR RGNHRRSISD 60 SIAFLEAPIV TSHMEEHNFD KFDDEQFMSM FTEDDDDLRN NRSHNNKNVG PSGCSLNTST 120 QADHKSFNDD EEPPSDHYMK DNNNNRNDEV RSKCKTEPED GTASSNNSGD SSSNRIIDPK 180 RVKRILANRQ SAQRSRVRKL QYISELERSV TSLQSEVSVL SPRVAFLDHQ RLLLNVDNSA 240 LKQRIAALAQ DKIFKDAHQE SLKREIERLR QVYQKKSFKK MENANHSPET GVDIKLSIEK 300 EQMLNI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269|PubMed:19449183}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622837.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241104 | 0.0 | AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622837.1 | 0.0 | PREDICTED: basic leucine zipper 34-like | ||||
Swissprot | F4IN23 | 1e-149 | BZP34_ARATH; Basic leucine zipper 34 | ||||
TrEMBL | A0A3N6R2D1 | 0.0 | A0A3N6R2D1_BRACR; Uncharacterized protein | ||||
STRING | Bra000256.1-P | 1e-173 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1753 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 1e-143 | bZIP family protein |
Publications ? help Back to Top | |||
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