PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622824.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 382aa    MW: 44160.9 Da    PI: 7.5922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025149172123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg+ ++++ +Lk+H +  H
  XP_013622824.1 149 YICGVCGRKCRTNLDLKKHFKQlH 172
                     89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.1E-569139IPR029060PIN domain-like
PROSITE profilePS5015710.637149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
CDDcd061671.82E-10163303No hitNo description
Gene3DG3DSA:3.40.50.10105.1E-5234288IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSLFCNSIET LYPKPYLPHK PHFFSLSDTK LRNLSFAGFP HLRIKSCLKS ASSSEIDMVR  60
NKEGVFAPKE KKVVVLWDLD NKPPRGPPYE AATELRRVAE KLGRVVEISA YANRHAFIHL  120
PHWVVEERRS RRSVDFAERK GEVIPSEPYI CGVCGRKCRT NLDLKKHFKQ LHERERQKKV  180
NRMRSLKGKK RQKFKERYVS GNEKYNEAAR RLLTPKVGYG LEAELRRAGV YVKTVEDKPQ  240
AADWAVKRQI QHSMTRGIDW LVLVSDDKDF SDMLRKAREA DLGTVVVSDR DGVLGRQADL  300
WVPWMGVENG EIGEKDLVPE KRRRFDDEDE LFSLAYDEDK REESDGFGRF SVSAFSEDEW  360
VEDEGDFALS DSDDDSEDEL GF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622824.10.0PREDICTED: uncharacterized protein LOC106328843
TrEMBLA0A0D3B3X10.0A0A0D3B3X1_BRAOL; Uncharacterized protein
STRINGBo3g023500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein