PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622789.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 589aa    MW: 65887.4 Da    PI: 4.3263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-09426468145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r rW++++ +l++++v+++G++  + + + ++  Rt+ q+k+++ 
   XP_013622789.1 426 RTRWSKQDTQLFYEGVQEFGSN-LSMVQQLFP-ERTRQQIKLKYK 468
                      78******************99.*********.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.4E-26419503No hitNo description
Gene3DG3DSA:1.10.10.601.3E-6423468IPR009057Homeodomain-like
SMARTSM007172.3E-7425473IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-9427477IPR009057Homeodomain-like
CDDcd001673.15E-5428468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MDLDFDDEPA APAARAGAKF KPRGRPQPKK KQVPLSTSQT TLSTDVAKEK LSTQSEHPVS  60
LEASSAYPSN VSTSETTVPD SGTINQSTMG TISKENVSGG ASVLRACTNL NSEGKRCEDG  120
TEAAPAYPDD PRRQDSATFG DSVTSETDEV IDDQTQRMQT GEVEEECDWN METLDIVQEE  180
CITSAYEQHT GKFQPKPRLL DTVIEEEPES HYSVDDTTGA NQSEFMVNEE SRNDEFNTNT  240
IPEVHKETAA PSVLEQEHHV VSPSNNDTVM GEGETQSNEA ETGADKKGKK KRGRKKKTTT  300
SEEEPNKSTP EKKKKFKHSS RRQKNRTLDK ELLETPDDEI RNLPIRDMLR LVAYRESLEK  360
KEAKGAPVVP PTQESNTNMS EDNHFYSQGF DAEDEFGMEE GENHEAPVVK PDSPVNYQTY  420
MNKTPRTRWS KQDTQLFYEG VQEFGSNLSM VQQLFPERTR QQIKLKYKLE ERKNPLKLND  480
ALSTRSKQLT HYHNVIKKLQ EEAAAAKEGE EEEEEGEEAG EEAETTTDVP ENEEPTKTEE  540
TERAGDVVAG VKESDGGDVE NGVRSDGGDE IDDNEGDDDD FWNSYKSEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294314KKKTTTSEEEPNKSTPEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895451e-105AC189545.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622789.10.0PREDICTED: glutamic acid-rich protein
RefseqXP_013698717.10.0glutamic acid-rich protein-like
TrEMBLA0A0D3BJD60.0A0A0D3BJD6_BRAOL; Uncharacterized protein
STRINGBo3g149920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-174MYB_related family protein