PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 347aa MW: 38131.1 Da PI: 9.1652 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 85 | 129 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky XP_013622788.1 85 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 129 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.43E-16 | 79 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.758 | 80 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-6 | 83 | 135 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-18 | 83 | 132 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.6E-10 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-10 | 85 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-7 | 87 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MHLYIHYILL SLPSSSSSFY TSFNFLVMVS RNPNPADGCF LDPKAMPVVP AIGPFAAVAD 60 AAETVSSGED LSKKIRKPYT ITKSRESWTE PEHDKFLEAL QLFDRDWKKI EAFIGSKTVI 120 QIRSHAQKYF LKVQKSGTGE HLPPPRPKRK AAHPYPQKAH KNAQPQVPGS FKSSAPEPID 180 PSSYMFRPES SSMLMTSPTT PAAAAAPWTN NVQTISFTPL PKGAGANNNC SSSSENTPKP 240 RSSRDTTEQA NPGHSLRVLP DFAQVYSFIG SVFDPYASNH LQKLKKMDPI DVETVLLLMR 300 NLSINLSSPD FEDHRRLLSA YDIGSEAATD PGGGSKTLNK DPPEIST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00560 | DAP | Transfer from AT5G52660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622788.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622788.1 | 0.0 | PREDICTED: protein REVEILLE 6-like isoform X2 | ||||
Swissprot | Q8H0W3 | 0.0 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0D3B3T3 | 0.0 | A0A0D3B3T3_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g023120.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-155 | MYB_related family protein |
Publications ? help Back to Top | |||
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