PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 31200.1 Da PI: 7.2203 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.2e-32 | 24 | 78 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++LGG+ekAtPkt++++m+vkgLtl+h+kSHLQk+R XP_013622750.1 24 KPRLRWTAELHERFVEAVTELGGPEKATPKTLMRTMGVKGLTLYHLKSHLQKFRQ 78 79****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-30 | 21 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.882 | 21 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-15 | 23 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-22 | 24 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-7 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.6E-24 | 123 | 172 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MYHGPLDGTN LPGDACLVLT TDPKPRLRWT AELHERFVEA VTELGGPEKA TPKTLMRTMG 60 VKGLTLYHLK SHLQKFRQGR QACKDSTDNS NKDASCVGES QDTGSSSPSS LKLAAQEQNE 120 SYQVTEALRA QMEVQRRLHE QLEHGQVQRR LQVRIEAQGK YLQTILEKAC KAFDEQAAMF 180 TGLETAREEL SELAIKVSNN SQGTTVPYFD ATKMMMMMPS LSELEVAAID HKSNITTTNC 240 SVESSLTSNT NGSSVSAASM KKRHRGGNNV GYEGSWTVPS STIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-20 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 24 | 80 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622750.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622750.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X1 | ||||
Swissprot | Q94A57 | 1e-170 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A0D3BCZ5 | 0.0 | A0A0D3BCZ5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AWM0 | 0.0 | A0A3P6AWM0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g081970.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3515 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.2 | 1e-173 | G2-like family protein |
Publications ? help Back to Top | |||
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