PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 284aa    MW: 31200.1 Da    PI: 7.2203
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.2e-322478155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt eLHerFveav++LGG+ekAtPkt++++m+vkgLtl+h+kSHLQk+R 
  XP_013622750.1 24 KPRLRWTAELHERFVEAVTELGGPEKATPKTLMRTMGVKGLTLYHLKSHLQKFRQ 78
                    79****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-302178IPR009057Homeodomain-like
PROSITE profilePS5129410.8822181IPR017930Myb domain
SuperFamilySSF466892.51E-152378IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-222478IPR006447Myb domain, plants
PfamPF002496.0E-72676IPR001005SANT/Myb domain
PfamPF143797.6E-24123172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MYHGPLDGTN LPGDACLVLT TDPKPRLRWT AELHERFVEA VTELGGPEKA TPKTLMRTMG  60
VKGLTLYHLK SHLQKFRQGR QACKDSTDNS NKDASCVGES QDTGSSSPSS LKLAAQEQNE  120
SYQVTEALRA QMEVQRRLHE QLEHGQVQRR LQVRIEAQGK YLQTILEKAC KAFDEQAAMF  180
TGLETAREEL SELAIKVSNN SQGTTVPYFD ATKMMMMMPS LSELEVAAID HKSNITTTNC  240
SVESSLTSNT NGSSVSAASM KKRHRGGNNV GYEGSWTVPS STIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-202480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-202480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-202480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-202480157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622750.10.0PREDICTED: myb family transcription factor APL-like isoform X1
SwissprotQ94A571e-170PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A0D3BCZ50.0A0A0D3BCZ5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AWM00.0A0A3P6AWM0_BRAOL; Uncharacterized protein
STRINGBo3g081970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.21e-173G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]