PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26844.7 Da PI: 8.2385 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 106.2 | 1.6e-33 | 32 | 141 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae++ ++ +e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v F++ XP_013622680.1 32 FEKSLTPSDVGKLNRLVIPKQHAEKYlplnngggeltSETTEKGMLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSKYVKDKHLDAGDVVFFQR 126 99******************************99999777889***************************************************6 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 + r + +l+++++r+ XP_013622680.1 127 H-RfDFHRLFIGWRRR 141 5.44888899999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-39 | 24 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-31 | 28 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.92E-30 | 31 | 132 | No hit | No description |
Pfam | PF02362 | 1.6E-30 | 32 | 141 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-25 | 32 | 142 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.789 | 32 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MLGNHYSRDI HHNTLSLHSH QNDTASHKES LFEKSLTPSD VGKLNRLVIP KQHAEKYLPL 60 NNGGGELTSE TTEKGMLLSF EDESGKSWKF RYSYWNSSQS YVLTKGWSKY VKDKHLDAGD 120 VVFFQRHRFD FHRLFIGWRR RGEASSLSAV SQEARVNTTV YWSGLTTPYR QVQASTSSYP 180 NIHQEYSQYG AVAETPTVVA GSSRTVRLFG VNLECHGDVV ETPPCSDGYN GQHIYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-48 | 26 | 141 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-48 | 26 | 141 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622680.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622680.1 | 1e-178 | PREDICTED: B3 domain-containing protein At3g11580-like | ||||
Refseq | XP_013644761.1 | 1e-178 | B3 domain-containing protein At3g11580-like | ||||
Swissprot | Q8RYD3 | 1e-124 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | A0A0D3BAS0 | 1e-176 | A0A0D3BAS0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g064320.1 | 1e-177 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.1 | 1e-126 | B3 family protein |
Publications ? help Back to Top | |||
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