PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622609.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 267aa    MW: 29683.7 Da    PI: 5.0675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.1e-1843137199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++++d+lks+rl+lp +f++e+g++k++  ++tl  ++g ++  +l  r +sgr+ l+kG k+F++angL+ g++++++l++ +++++v++
  XP_013622609.1  43 FVTLTLTNDSLKSSRLYLPLPFLKENGMDKPG--MVTLLGKDGTRMLANL-LRENSGRMSLGKGLKDFARANGLNMGESFTLELIW-ENATPVLS 133
                     7788899********************99766..8***************.799999*****************************.88889998 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++++
  XP_013622609.1 134 LLST 137
                     8765 PP
2B365.96.1e-21145239199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ +++ d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++angL+ g++++++ ++ ++++++++
  XP_013622609.1 145 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMTNL-LRESQGRMSLGKGWKDFARANGLEIGESFTLESIW-EDATPMLS 235
                     7788899********************99665..8***************.6888888*************************999.88889988 PP

                     EE-S CS
              B3  96 vfrk 99 
                     + ++
  XP_013622609.1 236 LSSR 239
                     8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-1834134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1839135IPR015300DNA-binding pseudobarrel domain
CDDcd100174.35E-1742136No hitNo description
PROSITE profilePS5086311.6643138IPR003340B3 DNA binding domain
PfamPF023624.8E-1743136IPR003340B3 DNA binding domain
SMARTSM010192.4E-2543138IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-21138241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-22141241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-19144236No hitNo description
PROSITE profilePS5086315.34145240IPR003340B3 DNA binding domain
PfamPF023621.7E-20145239IPR003340B3 DNA binding domain
SMARTSM010192.0E-29145240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRNGETPLLS VCPTESISDG PQGVDENIPQ ICRDSTLPNP NRFVTLTLTN DSLKSSRLYL  60
PLPFLKENGM DKPGMVTLLG KDGTRMLANL LRENSGRMSL GKGLKDFARA NGLNMGESFT  120
LELIWENATP VLSLLSTEFR SQNRFVTLTL TQDSFKNSRL GLPLPFMREN GMNEPGTIAL  180
LGKDGTKWMT NLLRESQGRM SLGKGWKDFA RANGLEIGES FTLESIWEDA TPMLSLSSRE  240
SKREKVYVST EPSIGNETKK DENNIED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622609.10.0PREDICTED: B3 domain-containing protein REM-like 1
RefseqXP_013683882.10.0B3 domain-containing protein REM12
SwissprotQ8S8E83e-68REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A0D3B7H00.0A0A0D3B7H0_BRAOL; Uncharacterized protein
STRINGBo3g041930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.11e-70B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]