PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622445.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 319aa    MW: 34730.4 Da    PI: 4.6209
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.3e-36371292103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++
  XP_013622445.1  37 FLTKTYQLVDDPVYDELISWNEDGSTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRD 122
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  XP_013622445.1 123 IQRRKIS 129
                     ****865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5733126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3734126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.16E-3434126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.0E-5187215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPGEQTGEVG GGCSAGNSGG SSGGGGGESQ RSIPTPFLTK TYQLVDDPVY DELISWNEDG  60
STFIVWKPAE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND CFRRGEKILL  120
RDIQRRKISQ PAMAAAAAPV LAHVVSPSNS GEEQVISSNS SPAGTGGGGG SVSVALQRTT  180
SSTTAPELME ENERLRKENV QLSQELTKLK GLYSNIYKLM SNFTSGGADC AKTLDLMPER  240
QEMSEEATET GTGLKLLTPR LFGVSIGVKR ARRDHELGAA AVEEDDNQEE EEQGSDDKSE  300
PMEENNSVDH NGPWLELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-272412617129Heat shock factor protein 1
5d5v_B3e-272412617129Heat shock factor protein 1
5d5v_D3e-272412617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325470.0AC232547.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622445.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-140HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0D3B8650.0A0A0D3B865_BRAOL; Uncharacterized protein
STRINGBo3g045370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-125HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]