PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 421aa MW: 46672.6 Da PI: 6.9688 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.3 | 9.4e-10 | 276 | 331 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr +r NR +A rs +RK +i eLe kv++L++e ++L + l+ + l+ XP_013622404.1 276 KRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQFTLLQRDMMGLT 331 899**************************************999888877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.5E-17 | 272 | 336 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.415 | 274 | 337 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-8 | 276 | 324 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.29E-11 | 276 | 332 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-11 | 276 | 331 | No hit | No description |
CDD | cd14703 | 2.08E-22 | 277 | 326 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MGDTDTDMIH RLHSPFGKQP KQLQLNPKPP TSPYSQIQNL NPVGATTSHS RSMSQPSSFF 60 SFDSLPPLSP SPFNNNNNNN PSSSLLPPSP FTRCNSDSSR VVLLPPRKSH RRSNSDISGG 120 ESADWSTKTT PPFVKKESGE REDMDDLFSA YMNLENIDDM ESSRASGTKT NGSDDTEGES 180 SSVNYESGGD RNNSLKRRAG AGGGDIAPTS RHYRSVSVDD SCFMEKMSFG EDSLKPPPTN 240 SVNGGIEFKS GEFNAAEMKK IMANDKLAEM AVSDPKRVKR ILANRQSAAR SKERKMRYIV 300 ELEHKVQTLQ TEATTLSAQF TLLQRDMMGL TNHNNELKFR LQAMEQQAQL RDALSEALNG 360 EVQRLKLAIG ETSHNESDRS KMQSLNAEMF QQLNISQLTQ QRQSQQNQNG TLSAKPESNE 420 L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622404.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080839 | 1e-163 | AY080839.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds. | |||
GenBank | AY150435 | 1e-163 | AY150435.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622401.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Refseq | XP_013622402.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Refseq | XP_013622403.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Refseq | XP_013622404.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
TrEMBL | A0A0D3BJA6 | 0.0 | A0A0D3BJA6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g149620.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-162 | bZIP family protein |