PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28293.2 Da PI: 9.7501 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.1 | 6.5e-11 | 7 | 55 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +W+ eE+ l av+++G+g+W+tI + R+ ++k++w++ XP_013622390.1 7 KWSREEESALRSAVAKHGPGRWRTILKDPDfsqvlFLRSNVDLKDKWRN 55 8*********************************955**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.239 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-14 | 4 | 61 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.79E-17 | 6 | 57 | No hit | No description |
Pfam | PF00249 | 1.9E-8 | 6 | 55 | IPR001005 | SANT/Myb domain |
SMART | SM00526 | 8.8E-10 | 62 | 133 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 23.901 | 67 | 138 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 8.71E-13 | 68 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.2E-12 | 73 | 140 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 9.0E-8 | 74 | 124 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGAPKHKWSR EEESALRSAV AKHGPGRWRT ILKDPDFSQV LFLRSNVDLK DKWRNICSSA 60 LQVSSPRTPN WLDSLITEAI CTMKQPGGSS KTAIGNYIQE RYEVPPNFKQ LLSSKLKYLS 120 AFGTGKLIKV KRKYRIPNST ALSSHKKRHL GTLSDKKRVQ NDEVSVQRQS EVDAELAKVT 180 IVNIHEAAAV AAQAVAEAEA AMVEADEAAK QAEIAEAEAE AAQVFAEEVS KSLKGIKQLQ 240 CADDPLLEVT ERRGRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622390.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_013622391.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Swissprot | Q8VWK4 | 2e-72 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A3P6BZ82 | 0.0 | A0A3P6BZ82_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g178250.1 | 1e-151 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20341 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-64 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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