PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 246aa MW: 26749.2 Da PI: 5.0565 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.6 | 5.8e-56 | 55 | 159 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_013622364.1 55 QLQMFWSYQrkeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 149 89*****998899********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivpr+e+k XP_013622364.1 150 VDIVPREEIK 159 ******9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.22E-34 | 33 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-20 | 77 | 140 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.6E-37 | 78 | 155 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering | ||||
GO:0051247 | Biological Process | positive regulation of protein metabolic process | ||||
GO:2000905 | Biological Process | negative regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDNNNQQPPP PPTSVYPPAS AATAIPPPPP PSGSTPIIPG GGASYHHLLQ QQLQQLQMFW 60 SYQRKEIEQV NDFKNHQLPL ARIKKIMKAD EDVRMISAEA PILFAKACEL FILELTIRSW 120 LHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREEIKE EEEAALGSMV AAPAVSGVPY 180 YYPPMGHPAV PGGMMIGRPA MDPSGVYAQP PSQAWQSVWQ NSAAGDDVSY GSGGSSGGHG 240 NLDNQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-55 | 63 | 155 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.5929 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622364.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797143 | 0.0 | KC797143.1 Brassica napus transcription factor subunit NF-YC4 (NF-YC4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622364.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 1e-131 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A0D3BFE6 | 0.0 | A0A0D3BFE6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g103350.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-109 | nuclear factor Y, subunit C4 |