PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 385aa MW: 43079.7 Da PI: 6.3798 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.7e-08 | 324 | 357 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_013622359.1 324 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 357 469*****************************87 PP | |||||||
2 | ELK | 29 | 2.5e-10 | 278 | 299 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_013622359.1 278 ELKHELKQGYKEKIVDIREEIL 299 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-19 | 112 | 156 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.8E-18 | 115 | 155 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.3E-27 | 168 | 224 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-19 | 174 | 223 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 278 | 298 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 278 | 299 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.8E-7 | 278 | 299 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 298 | 361 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 300 | 365 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-11 | 300 | 365 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.51E-11 | 301 | 362 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 305 | 362 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 318 | 357 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAFHNNHFNH FTDQQHQPPL PPPPQQQEHH FHESTPPNWL LRSDNNFLNL HTPASAAATS 60 SDSPSSAAAN QWLSRSSSFL QRGGGASNNN AGSGDAMENI TGGEESMIGE NARHKAEILS 120 HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK YSTLDAASQG LISGDEKELD 180 HFMSHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SFTGVSPGEG TGATMSEDED 240 EQVESDAHLF DGSLDGLGFG PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR 300 KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH 360 SNPSSSTASK NKRRSNAGEN SGRER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 301 | 365 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622359.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353338 | 0.0 | AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622359.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 4 isoform X1 | ||||
Refseq | XP_013661884.1 | 0.0 | homeobox protein knotted-1-like 4 isoform X1 | ||||
Refseq | XP_022554307.1 | 0.0 | homeobox protein knotted-1-like 4 isoform X1 | ||||
Swissprot | P48001 | 0.0 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A0D3B0K3 | 0.0 | A0A0D3B0K3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AKQ1 | 0.0 | A0A3P6AKQ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g006870.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 0.0 | KNOTTED1-like homeobox gene 4 |
Publications ? help Back to Top | |||
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