PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622338.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 339aa MW: 37826.5 Da PI: 6.6351

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.7e-12	138	196	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r ++NR +A rs +RK +i +Le++v++L+ae + l+ ++ +a l se+ XP_013622338.1 138 KRAKRIMSNRQSAARSKERKARYIMQLERRVQTLQAEYATRSAHLSLINTDIAGLLSEN 196 9************************************9999999999999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-13	134	198	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.484	136	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.19E-9	138	192	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.7E-7	138	174	No hit	No description
Pfam	PF00170	1.9E-11	138	196	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.42E-19	139	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDHDPSNAKP NQHPPLTNPS PTSFRGPNHR RAHSEVQFRL PEDLDLSETF SGFDDLGSED 60 DLFCSFMDIE NLGSGPGNNN PFPAENGGGG GREEEGGSSR PRHRHSVSVD GSSSLESIEA 120 KKPMTPEKLA ELWVVDPKRA KRIMSNRQSA ARSKERKARY IMQLERRVQT LQAEYATRSA 180 HLSLINTDIA GLLSENTELK LRIQAVEQKA KLRDALNEKM KKEAERLRFA AAGQVSHSDA 240 YNLQVARMQY SQQQSFFQQQ ADAQNMQQMT PQFHLFQPNN NNNNNQNPQL MHHATSNASG 300 QSHSYSEEVH EDHLGSLQGL DISNGSNFGR SSESSSSTM

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622338.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622338.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-158	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A078GHP7	0.0	A0A078GHP7_BRANA; BnaC03g22760D protein
TrEMBL	A0A0D3B632	0.0	A0A0D3B632_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6B0S4	0.0	A0A3P6B0S4_BRAOL; Uncharacterized protein
STRING	Bo3g035070.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23312	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-110	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]