PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622295.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 337aa    MW: 37998.6 Da    PI: 4.4997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1561.6e-4861341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtd elv +yLk+kv gkkl + ++i e+diyk+eP+dLp k  +k+++ +w+fF++r+kkyatg r+nrat+ gyWk+tgkd++vl
  XP_013622295.1   6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIVELDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYATGVRANRATECGYWKTTGKDRAVL 99 
                     579************************999.89**************96347778888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     + ++e+vg  ktLv++ g++p+ge+tdWvmheyrle
  XP_013622295.1 100 C-NDEVVGKIKTLVYHVGKSPRGERTDWVMHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-583156IPR003441NAC domain
PROSITE profilePS5100552.5276156IPR003441NAC domain
PfamPF023657.5E-268133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIVE LDIYKFEPSD LPDKSYIKSG  60
DLKWHFFCPR EKKYATGVRA NRATECGYWK TTGKDRAVLC NDEVVGKIKT LVYHVGKSPR  120
GERTDWVMHE YRLEDKVLAQ KNIPQDTYVL CVLFKKDGPG PRNGAQYGAP FNEEDWSDQE  180
QHLNDAAHTP LSATPLLDSN STASLGPTLQ APTNNYDDIY SMLDRFVDED ECLPFCEPNN  240
NEVIHDTCVP APVFLEEGED MFSELLDLSI IHDNSMPRTP SNDLIENSEL YLELQDLTAP  300
LAPPPAGNGG DSYLSYQGHF DLSTANDDDP FGFSAFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-43615615168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667580.0KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622295.10.0PREDICTED: NAC domain-containing protein 82-like
SwissprotQ9FY821e-147NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A0D3B0D00.0A0A0D3B0D0_BRAOL; Uncharacterized protein
STRINGBo3g005150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-133NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]