PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24162.7 Da PI: 6.5191 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9.2e-08 | 5 | 49 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT Ed+ + +a +++ g +W++Ia ++ +++ ++++++ XP_013622270.1 5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLN--KSAGEVREHYEV 49 7*******************************8..9********965 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky XP_013622270.1 97 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.246 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-8 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-12 | 4 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 5 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-4 | 6 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-6 | 6 | 51 | No hit | No description |
PROSITE profile | PS51294 | 17.736 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-15 | 92 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-16 | 93 | 145 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-8 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-10 | 96 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-7 | 97 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLNKSA GEVREHYEVL VHDVLEIDSG 60 RVHVPDYMDD SAAGWDSAAQ ISFGSKHGEG ERKRGTPWSE NEHKLFLIGL KRYGKGDWRS 120 ISRNVVVTRT PTQVASHAQK YFLRQNSVKK ERKRSSIHDI TTVDTNLAMP GSNMDWTGQQ 180 ESSVQAQQQQ GMSEFGQELT PGGHYEEFGY RM |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622270.1 | 1e-159 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-55 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0D3AZR1 | 1e-157 | A0A0D3AZR1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g002960.1 | 1e-158 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-124 | MYB family protein |
Publications ? help Back to Top | |||
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