PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622111.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 374aa MW: 41306.1 Da PI: 9.106

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	58.6	1.1e-18	151	200	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_013622111.1 151 RSKHSATEQRRRSKINDRFQKLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 200 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-23	147	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.479	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-19	150	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.34E-15	151	202	No hit	No description
Pfam	PF00010	4.0E-16	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MMFPVSGGGG VERNVADAAA VASGFTMWDE SGSGTKGQTR KENNAGERAN IRADAATTIG 60 QWPAQSLTNN NPLSGFSSRS SSQGSGLKSQ SFMDMIRSAK GTSQDDDLDD EDDFVMKKES 120 SSTSQIPTVD MRVKAEARGA GNNDPKMNTP RSKHSATEQR RRSKINDRFQ KLRQLIPNSD 180 QKRDKASFLL EVIEYIQFLQ EKTSKCETPY QGWNQEPAKL LNWQKNNQQL VPEGTVGFAP 240 KLKEEKNNIP ILAPAETLNR VTPFPLLVQS NSLFCPVTQL NARVASSETA EPSPSSRSHT 300 QPLKEEEEEE VHEGNISISS VYSQGLVKRL REALEKSGVD LTKATISVEI ELAKRSSEVK 360 QTRRPKRLKT CNTS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MMFPVSGGGG VERNVADAAA VASGFTMWDE SGSGTKGQTR KENNAGERAN IRADAATTIG  60
QWPAQSLTNN NPLSGFSSRS SSQGSGLKSQ SFMDMIRSAK GTSQDDDLDD EDDFVMKKES  120
SSTSQIPTVD MRVKAEARGA GNNDPKMNTP RSKHSATEQR RRSKINDRFQ KLRQLIPNSD  180
QKRDKASFLL EVIEYIQFLQ EKTSKCETPY QGWNQEPAKL LNWQKNNQQL VPEGTVGFAP  240
KLKEEKNNIP ILAPAETLNR VTPFPLLVQS NSLFCPVTQL NARVASSETA EPSPSSRSHT  300
QPLKEEEEEE VHEGNISISS VYSQGLVKRL REALEKSGVD LTKATISVEI ELAKRSSEVK  360
QTRRPKRLKT CNTS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622111.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	2e-63	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622111.1	0.0	PREDICTED: transcription factor BIM1-like isoform X5
Refseq	XP_013622112.1	0.0	PREDICTED: transcription factor BIM1-like isoform X5
Swissprot	Q9LEZ3	1e-155	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A0D3B084	0.0	A0A0D3B084_BRAOL; Uncharacterized protein
STRING	Bo3g004690.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	1e-144	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]