PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622095.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 271aa    MW: 29505.9 Da    PI: 8.0612
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-20194228135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  XP_013622095.1 194 CQHCGADKTPQWRAGPSGPKTLCNACGVRYKSGRL 228
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-17188238IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.479188224IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-15190251No hitNo description
Gene3DG3DSA:3.30.50.102.3E-15192226IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.93E-15193242No hitNo description
PfamPF003207.7E-18194228IPR000679Zinc finger, GATA-type
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESFMEELLN FSVPEEEGGA VVRSPKNIAR RKTGLRQTES FGLLNPDDEL GEGEVEEEDL  60
EWISNKDAFP VIETFVGVLP SEHFSVSSPE REATEGKQLS PVSVLETSSQ NISITTTTTT  120
SNNSSGGSNR SVPTPTMISC CAKFNAPVKT RSKRRRREDL RILWTGNDEQ GGGGGGSQKR  180
RMTSVAAAAM GRKCQHCGAD KTPQWRAGPS GPKTLCNACG VRYKSGRLVP EYRPANSPTF  240
SPEFHSNSHR KIVEMRKHVV SSDGGGRQDC G
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274933e-61AK227493.1 Arabidopsis thaliana mRNA for GATA transcription factor 1, complete cds, clone: RAFL14-11-O16.
GenBankAP0012973e-61AP001297.1 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13.
GenBankAY0875973e-61AY087597.1 Arabidopsis thaliana clone 36927 mRNA, complete sequence.
GenBankBT0244973e-61BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds.
GenBankCP0026863e-61CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankY136483e-61Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622095.10.0PREDICTED: GATA transcription factor 1
RefseqXP_013712235.10.0GATA transcription factor 1-like
SwissprotQ8LAU91e-106GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A0D3BCZ30.0A0A0D3BCZ3_BRAOL; Uncharacterized protein
STRINGBo3g081950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-95GATA transcription factor 1