PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621962.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 563aa    MW: 63229.9 Da    PI: 6.4491
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23116216198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  XP_013621962.1 116 FVKILTASDTSTHGGFSVLRKHATEClplldMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGKTG 208
                     89****************************9666677789************************************************..34888 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                      l+v+v+r
  XP_013621962.1 209 DLRVGVRR 216
                     89***998 PP

2Auxin_resp91.61.3e-30242321183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++tk++F v+Y+Pr   s+F++ v+k+++a+k+ +s G Rf+m+fe+e+s+er ++G ++g  d++p +W+ SkWr+L+
  XP_013621962.1 242 ASHAVNTKTMFVVFYKPRI--SQFIIGVNKYMSAMKSGFSTGRRFRMRFEGEESPERVFTGAIIGSGDISP-QWQASKWRLLQ 321
                     789***************8..9***********************************************99.*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-38103245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-38109231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-20115216No hitNo description
SMARTSM010192.5E-21116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.069116218IPR003340B3 DNA binding domain
PfamPF023622.5E-21116216IPR003340B3 DNA binding domain
PfamPF065071.9E-27242321IPR010525Auxin response factor
PfamPF023092.8E-8435488IPR033389AUX/IAA domain
SuperFamilySSF542773.43E-12442528No hitNo description
PROSITE profilePS5174525.547452544IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MANVEDDHLY MELWKACAGP LVEVPRYGER VFYFPQGHME QLVASTNQEG VVDQEIPDFN  60
LPSKLLCRVL SVLLKAEHET DEVYAQITLQ PEEDQNEPES LDPPVTEAAK QSVDSFVKIL  120
TASDTSTHGG FSVLRKHATE CLPLLDMTQP TPTQELVARD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDAF VFLRGKTGDL RVGVRRLARQ QSTMPASVIS SQSMNLGVLA  240
TASHAVNTKT MFVVFYKPRI SQFIIGVNKY MSAMKSGFST GRRFRMRFEG EESPERVFTG  300
AIIGSGDISP QWQASKWRLL QWDEPSLVQR PNRVSPWEIE PFSPSKLTID SSVSEITGSP  360
VASNFLSSFP QSHEANPSLK LLFQDPPSGL QCKKTETSVT SCCRLFGFDL MSKPTTTPSP  420
LGKQVISMDS NNSASTKCQD LNSHQKQQTS TRSRIKVQMQ GTAVGRAVDL TLLRSYDELL  480
SELEKLFEIE GELRPKDKWA IVFTDNEGYM MLAGDDPWNE FCKMAKKLFI YSSDEVKKMS  540
SKSSLDDEGT IINLEPDQRI ANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-156234312356Auxin response factor 1
4ldw_A1e-156234312356Auxin response factor 1
4ldw_B1e-156234312356Auxin response factor 1
4ldx_A1e-156234312356Auxin response factor 1
4ldx_B1e-156234312356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533630.0AK353363.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-L13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621962.10.0PREDICTED: auxin response factor 11-like isoform X2
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A0D3B7090.0A0A0D3B709_BRAOL; Auxin response factor
STRINGBo3g039330.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]