PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013621961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 565aa MW: 63471.2 Da PI: 6.4491 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 3e-23 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +k+a+e+ + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++ XP_013621961.1 116 FVKILTASDTSTHGGFSVLRKHATEClplldMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGKTG 208 89****************************9666677789************************************************..34888 PP ..EEEEE- CS B3 91 elvvkvfr 98 l+v+v+r XP_013621961.1 209 DLRVGVRR 216 89***998 PP | |||||||
2 | Auxin_resp | 91.6 | 1.3e-30 | 242 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk++F v+Y+Pr s+F++ v+k+++a+k+ +s G Rf+m+fe+e+s+er ++G ++g d++p +W+ SkWr+L+ XP_013621961.1 242 ASHAVNTKTMFVVFYKPRI--SQFIIGVNKYMSAMKSGFSTGRRFRMRFEGEESPERVFTGAIIGSGDISP-QWQASKWRLLQ 321 789***************8..9***********************************************99.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-38 | 103 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-38 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.51E-20 | 115 | 216 | No hit | No description |
PROSITE profile | PS50863 | 12.069 | 116 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-21 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-21 | 116 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.9E-27 | 242 | 321 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.8E-8 | 437 | 490 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.43E-12 | 444 | 530 | No hit | No description |
PROSITE profile | PS51745 | 25.547 | 454 | 546 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MANVEDDHLY MELWKACAGP LVEVPRYGER VFYFPQGHME QLVASTNQEG VVDQEIPDFN 60 LPSKLLCRVL SVLLKAEHET DEVYAQITLQ PEEDQNEPES LDPPVTEAAK QSVDSFVKIL 120 TASDTSTHGG FSVLRKHATE CLPLLDMTQP TPTQELVARD LHGYEWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLVAGDAF VFLRGKTGDL RVGVRRLARQ QSTMPASVIS SQSMNLGVLA 240 TASHAVNTKT MFVVFYKPRI SQFIIGVNKY MSAMKSGFST GRRFRMRFEG EESPERVFTG 300 AIIGSGDISP QWQASKWRLL QIQWDEPSLV QRPNRVSPWE IEPFSPSKLT IDSSVSEITG 360 SPVASNFLSS FPQSHEANPS LKLLFQDPPS GLQCKKTETS VTSCCRLFGF DLMSKPTTTP 420 SPLGKQVISM DSNNSASTKC QDLNSHQKQQ TSTRSRIKVQ MQGTAVGRAV DLTLLRSYDE 480 LLSELEKLFE IEGELRPKDK WAIVFTDNEG YMMLAGDDPW NEFCKMAKKL FIYSSDEVKK 540 MSSKSSLDDE GTIINLEPDQ RIANL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-159 | 2 | 345 | 12 | 356 | Auxin response factor 1 |
4ldw_A | 1e-159 | 2 | 345 | 12 | 356 | Auxin response factor 1 |
4ldw_B | 1e-159 | 2 | 345 | 12 | 356 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013621961.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353363 | 0.0 | AK353363.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-L13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621961.1 | 0.0 | PREDICTED: auxin response factor 11-like isoform X1 | ||||
Swissprot | Q9ZPY6 | 0.0 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | A0A0D3B709 | 0.0 | A0A0D3B709_BRAOL; Auxin response factor | ||||
STRING | Bo3g039330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.1 | 0.0 | auxin response factor 11 |
Publications ? help Back to Top | |||
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