PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621948.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 394aa    MW: 43345.9 Da    PI: 7.6423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.6e-16211256555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  XP_013621948.1 211 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 256
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-18204267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13211256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17211264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-17211259No hitNo description
SMARTSM003531.3E-17212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSQCVPNYHI DDTPAATVRS TKAADIPTLD YEVAELTWHN GQLGLHGLCP PRVPALSKFS  60
TGAGGTLESI VDQATRFPNP KPTDELVPSF HHRYSRVRMD ALVPEQQSQP ATGVGSCSDG  120
HPMDGGKRAR VAPEWSASRS QRLTIDTYGF TSTSLDDNSS SGGKPFPKTT NIDDHDSVCH  180
SRPQVEEEEE EKQTGGKSSA STKRSRAAAI HNQSERKRRD KINQRMKTLQ KLVPNSSKTD  240
KASMLDEVIE YLKQLQAQVY MMSRMNMPSM MLPMAMQQQQ QQLQLNLMSS SMGLGLRMGM  300
PGLGLVDLSS MNRAATATAP NIHANMIQNP FVPMTSTSWD ASSSTDPRFQ SPLIPDPMSA  360
FLACSSQPTT MEAYSRMAAL YHQMQQQLPP SNQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219ERKRRD
2215220RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621948.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621948.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ380.0UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D3B9690.0A0A0D3B969_BRAOL; Uncharacterized protein
STRINGBo3g054850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-153bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]