PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621932.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 349aa    MW: 37955.7 Da    PI: 4.6219
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1475.4e-15194247356
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     ++kr+rr+ +NRe+ArrsR+RK++++ e    v +L +e +++ k+l+e +++ 
  XP_013621932.1 194 DVKRARRMLSNRESARRSRRRKQEQMSEFDSQVGQLRGEHSTMLKRLSEVTQKF 247
                     68*********************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-15192256IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.507194246IPR004827Basic-leucine zipper domain
PfamPF001701.6E-12195246IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.58E-10195246No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-10196246No hitNo description
PROSITE patternPS000360199214IPR004827Basic-leucine zipper domain
PfamPF124981.4E-9263319IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKSGFSADDS TDSFWPPPPP SPPLSPGDGM TRSQSEWAFQ MLLEEISSVP AGSSISSSSA  60
TDNAIGRSYT QVRSESSVSR TEEASSNYYQ AIFKSKLELA CAAVALRVST TVTPEDSSAS  120
SGNQNQVSPV GSQTQGYAVA QMSPAVSSVS DAPSLDAQRQ RDIQSRQANS GSDDSDDEDP  180
DGETVTTVNA DPTDVKRARR MLSNRESARR SRRRKQEQMS EFDSQVGQLR GEHSTMLKRL  240
SEVTQKFSTA VVDNRILKAD IETLRTKVKM AEDTVKRVTG MNPRLLAKPY SIPFDRTLMG  300
SSQPNLNQTD MIPNQISEDD SFASNSVVTL EASCNAFETT SWICDKDAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208215RRSRRRKQ
2210215SRRRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621932.10.0PREDICTED: basic leucine zipper 25-like isoform X3
SwissprotQ9M1G65e-71BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A0D3B5R50.0A0A0D3B5R5_BRAOL; Uncharacterized protein
STRINGBo3g032910.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.19e-64basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]