PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013621926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 555aa MW: 62039.1 Da PI: 7.857 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.7e-08 | 259 | 279 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_013621926.1 259 PCPEFRK-GSCPKGDSCEYAHG 279 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 7.93E-13 | 35 | 160 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.275 | 78 | 149 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.1E-13 | 78 | 177 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 9.8E-4 | 78 | 108 | IPR002110 | Ankyrin repeat |
Pfam | PF13637 | 7.2E-7 | 79 | 132 | No hit | No description |
CDD | cd00204 | 5.15E-12 | 80 | 177 | No hit | No description |
SMART | SM00248 | 16 | 114 | 146 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 13.976 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-5 | 254 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 259 | 280 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 259 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 286 | 318 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 67 | 289 | 312 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MCGSERNLCS SRTSYTEAEL MRAKEEQERV DATMPLLEYA ACDDLPSFKR QTEENSLDIN 60 EPGLWYCKRV GSKKMGFQER TPLMVAAMYG SIEVLTYIIS IGRSDVNRVS SDEEKVTALH 120 CAVSGCSVSI VQVIKILLDA SASPNCLDAN RNKPVDLLVQ ASRFIPNQTR KAVELLLTGI 180 ISSEEEEVMK SVVSKYPADA SLPDINEGVY GTDEFRMFSF KVKPCSRAYS HDWTECPFVH 240 PGENARRRDP RKYPYTCVPC PEFRKGSCPK GDSCEYAHGV FESWLHPAQY KTRLCKDETC 300 CARKVCFFAH RRDELRAVNA STGSAMVSPP MSPSSPSVTL SPRNGGLWQN RVNSLTPPPL 360 QLNGSRLKSN LSARDMDMEM ELRLRRGAYD SPSSVLQLQS PSRSHYPSSP VRQPPPHGFE 420 SSAAMAAAVM NARSSAFARR SLSFKPAPVA TSNVVSEWGS PNGKLEWGMQ REEMNKMRRS 480 ASFGIHGNNN NSYNNVSVPV RDYSDEPDVS WVNSLVKESE PERAFGLNER VGNTFKVRSW 540 AEQMYIDHEK QQIVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.9293 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013621926.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621926.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_013640482.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_013716870.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_022554838.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_022566463.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A0D3B600 | 0.0 | A0A0D3B600_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AJK6 | 0.0 | A0A3P6AJK6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g034750.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |