PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013621866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 367aa MW: 41963.6 Da PI: 8.3551 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.5 | 2.2e-11 | 81 | 117 | 3 | 39 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 ++k +rr+++NReAAr+sR+RKka++++Le+ +L XP_013621866.1 81 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 117 6899**************************8655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.9E-6 | 79 | 146 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.772 | 81 | 123 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-8 | 81 | 112 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.88E-7 | 83 | 118 | No hit | No description |
CDD | cd14708 | 5.53E-22 | 83 | 134 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.9E-7 | 85 | 111 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 86 | 101 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.6E-30 | 169 | 244 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MNSTSTHFVP PSRVGIYEPL HQFGMWGETF KSNIGNGGSV NTPNHILIPN IQKLDNNNLS 60 EDTSHGTPHM FDQEASTSRH PDKIQRRLAQ NREAARKSRL RKKAYVQQLE TSRLKLIQLE 120 QELDRARQQG FYVGNGIDTS SLGLSETMNP GIAAFEMKYG HWIEEQNRQI CELRTVLHGH 180 VTDVELRSLV ENTMKHYFEL FRMKSAAAKA DVFFVMSGMW RTSAERFFLW IGGFRPSDLL 240 KVLLPHFDVM TDQQVLDVCN LRQSCQQAED ALYQGMEKLQ HTLAECVARG GLGEGNYIPQ 300 VNSAMERLEA LVSFVNQADH LRHETLQQMH RILTTRQAAR GLLALGEYFQ RLRALSSSWA 360 TRHREPT |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013621866.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ532057 | 0.0 | FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621864.1 | 0.0 | PREDICTED: transcription factor TGA1 | ||||
Refseq | XP_013621865.1 | 0.0 | PREDICTED: transcription factor TGA1 | ||||
Refseq | XP_013621866.1 | 0.0 | PREDICTED: transcription factor TGA1 | ||||
Swissprot | Q39237 | 0.0 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A0D3BEV0 | 0.0 | A0A0D3BEV0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g099410.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 0.0 | bZIP family protein |