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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_013621765.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
GRAS |
Protein Properties |
Length: 676aa MW: 76048.2 Da PI: 6.9114 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013621765.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 374.9 | 1e-114 | 302 | 671 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s+
XP_013621765.1 302 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSY 393
689***************************************************************9999...999******************* PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
+++N++I + v ++ rvH+iDf+i +G+QWp+L++ ++ g+p++R+Tg++ p++g ++++eetgerLa +A+++gvpfe+++ +ak++++
XP_013621765.1 394 FITNKTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGKPKVRVTGIEFPQPGfrPTQRVEETGERLAAYAKQFGVPFEYKA-IAKKWDA 485
**************************************8..8***************9*****************************.7****** PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+ + +n++ F++rf eal ++s++fd+le+ +pre+eer+
XP_013621765.1 486 VQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERM 580
*********************************************************************************************** PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+ + +++++ + + +++++ +l++gWk+r+++++S+W+
XP_013621765.1 581 FLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPDIMKTSLHKVNTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 671
**************************************************************888*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 676 aa
Download sequence Send
to blast |
MITDPAPVDR TRLPDQPSSL TLFDGYNYNH GLSNNQNAFA TSAAGEEEDP ADEFDFSDAV 60 LGYISQILME EDMDDRVCML QESLDLEAAE RSLYEAIGKK YPPSPERSSP YIENLDHVVP 120 AGDRNGSGGG FMSGGMKPMS GGGFTLDFRN PQSLCSPVLS VPQSPYGVHE SWNASRDDQS 180 VWLFRRGVEE DSERNEMIVN FREDSRSKGR RNPNSGEEER CSKLPAVFSE TILRSDVVDK 240 ILVHVPGGES MKEFDALREV LKKGVGKKKA SAPQEGKRRA RGRGRGRGRG RGGGVKKEVV 300 DLRSLLIHCA QAVAADDSRC AGQLLKQIRQ HSTPFGDGNQ RLAHCFANGL EARLAGTGSQ 360 IYKGIVSKPR SAAAVLKAHQ LFLACCPFRK LSYFITNKTI RDLVGNSPRV HVIDFGILYG 420 FQWPTLIHRF SIYGKPKVRV TGIEFPQPGF RPTQRVEETG ERLAAYAKQF GVPFEYKAIA 480 KKWDAVQLED LDIDRDEITV VNCLYRAENL HDESVKVESC RDAVLSLIGK INPDLFVFGI 540 VNGAYNAPFF VTRFREALFH FSSIFDMLET IVPREDEERM FLEMEVFGRE ALNVIACEGW 600 ERVERPETYK QWHVRAMRSG LVQVPFDPDI MKTSLHKVNT FYHKDFVIDQ DNRWLLQGWK 660 GRTVMALSVW KPESKA
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 280 | 290 | RGRGRGRGRGR |
2 | 282 | 291 | RGRGRGRGRG |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. |
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |