PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621765.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 676aa    MW: 76048.2 Da    PI: 6.9114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.91e-1143026711374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+ k+s+
  XP_013621765.1 302 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSY 393
                     689***************************************************************9999...999******************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++N++I + v ++ rvH+iDf+i +G+QWp+L++ ++    g+p++R+Tg++ p++g   ++++eetgerLa +A+++gvpfe+++ +ak++++
  XP_013621765.1 394 FITNKTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGKPKVRVTGIEFPQPGfrPTQRVEETGERLAAYAKQFGVPFEYKA-IAKKWDA 485
                     **************************************8..8***************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++fd+le+ +pre+eer+
  XP_013621765.1 486 VQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERM 580
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+  + +++++ + + +++++ +l++gWk+r+++++S+W+
  XP_013621765.1 581 FLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPDIMKTSLHKVNTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 671
                     **************************************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.119276651IPR005202Transcription factor GRAS
PfamPF035143.5E-112302671IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MITDPAPVDR TRLPDQPSSL TLFDGYNYNH GLSNNQNAFA TSAAGEEEDP ADEFDFSDAV  60
LGYISQILME EDMDDRVCML QESLDLEAAE RSLYEAIGKK YPPSPERSSP YIENLDHVVP  120
AGDRNGSGGG FMSGGMKPMS GGGFTLDFRN PQSLCSPVLS VPQSPYGVHE SWNASRDDQS  180
VWLFRRGVEE DSERNEMIVN FREDSRSKGR RNPNSGEEER CSKLPAVFSE TILRSDVVDK  240
ILVHVPGGES MKEFDALREV LKKGVGKKKA SAPQEGKRRA RGRGRGRGRG RGGGVKKEVV  300
DLRSLLIHCA QAVAADDSRC AGQLLKQIRQ HSTPFGDGNQ RLAHCFANGL EARLAGTGSQ  360
IYKGIVSKPR SAAAVLKAHQ LFLACCPFRK LSYFITNKTI RDLVGNSPRV HVIDFGILYG  420
FQWPTLIHRF SIYGKPKVRV TGIEFPQPGF RPTQRVEETG ERLAAYAKQF GVPFEYKAIA  480
KKWDAVQLED LDIDRDEITV VNCLYRAENL HDESVKVESC RDAVLSLIGK INPDLFVFGI  540
VNGAYNAPFF VTRFREALFH FSSIFDMLET IVPREDEERM FLEMEVFGRE ALNVIACEGW  600
ERVERPETYK QWHVRAMRSG LVQVPFDPDI MKTSLHKVNT FYHKDFVIDQ DNRWLLQGWK  660
GRTVMALSVW KPESKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-4430867425382Protein SCARECROW
5b3h_A1e-4330867424381Protein SCARECROW
5b3h_D1e-4330867424381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280290RGRGRGRGRGR
2282291RGRGRGRGRG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621765.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D3B5G30.0A0A0D3B5G3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AC640.0A0A3P6AC64_BRAOL; Uncharacterized protein
STRINGBo3g031890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein