PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013621760.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 836aa MW: 91633.1 Da PI: 6.5906

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013621760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.4e-18	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_013621760.1 18 KYVRYTSEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP
2	START	165.6	3.4e-52	162	367	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g+++l XP_013621760.1 162 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELL 255 7899****************************************************.7777777777************9999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-.TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvds.eqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s +++pp +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l++s XP_013621760.1 256 YMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSgPSMPP-VQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLYES 349 *********************************98456666.8******************************************** PP HHHHHHHHHHHHTXXXXX CS START 188 glaegaktwvatlqrqce 205 + ++kt++a+l+++++ XP_013621760.1 350 PKVLAQKTTMAALRQLKQ 367 ************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.289	13	77	IPR001356	Homeobox domain
SMART	SM00389	3.2E-15	15	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-16	18	81	IPR009057	Homeodomain-like
CDD	cd00086	3.65E-16	18	78	No hit	No description
Pfam	PF00046	8.7E-16	19	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.9E-18	20	76	IPR009057	Homeodomain-like
CDD	cd14686	1.14E-6	70	109	No hit	No description
PROSITE profile	PS50848	24.285	152	377	IPR002913	START domain
CDD	cd08875	2.76E-74	156	369	No hit	No description
SMART	SM00234	1.7E-38	161	368	IPR002913	START domain
SuperFamily	SSF55961	9.61E-37	161	370	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.4E-22	161	344	IPR023393	START-like domain
Pfam	PF01852	1.1E-49	162	367	IPR002913	START domain
Pfam	PF08670	4.1E-52	693	835	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MAMSYKDGGK MGCMDNGKYV RYTSEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVHENSYFRQ 120 HTPNPSLPAK DTSCESVVTS GQHQLASLNP PRDASPAGLL SIAEETLAEF LSKATGTAVE 180 WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGLEPTR VAEIVKDRPS WFRECRAVDV 240 MNVLPTANGG TIELLYMQLY APTTLAPPRD FWLLRYTSVL EDGSLVVCER SLKSGPSMPP 300 VQHFVRAEML PSGYLIRPCD GGGSIIHIVD HMDLEACSVP EVLRPLYESP KVLAQKTTMA 360 ALRQLKQIAQ ESSQTNSSVN GWGRRPAALR ALSQRLSRGF NEAVNGFTDE GWSVIGDSMD 420 DVTITVNSSA DKLMGLNLTF SNGFAPVSNV VLCAKASMLL QNVPPAILLR FLREHRSEWA 480 DNNINAYLAA AVKVGPCSAR VGGFGGQVIL PLAHTIEHEE FMEVIKLEGL GHSPEDAIVP 540 RDIFLLQLCS GMDENAVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS TKEASSPNRT 600 LDLASALEIG PAGTTKASTD QSGNSGTCAR SVMTIAFEFG VESHMQEHVA SIARQYVRGI 660 ISSVQRVALA LSPSHIRSQV GLRTPLGTPE AQTLARWICQ SYRCYMGVEL LKSNGEGNES 720 ILKNLWHHTD AIICCSMKAM PVFTFANQAG LDMLETTLVS LQDITLEKIF DDSGRKTLCS 780 EFPQIMQQGF GSLQGGICIS SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MAMSYKDGGK MGCMDNGKYV RYTSEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVHENSYFRQ  120
HTPNPSLPAK DTSCESVVTS GQHQLASLNP PRDASPAGLL SIAEETLAEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGLEPTR VAEIVKDRPS WFRECRAVDV  240
MNVLPTANGG TIELLYMQLY APTTLAPPRD FWLLRYTSVL EDGSLVVCER SLKSGPSMPP  300
VQHFVRAEML PSGYLIRPCD GGGSIIHIVD HMDLEACSVP EVLRPLYESP KVLAQKTTMA  360
ALRQLKQIAQ ESSQTNSSVN GWGRRPAALR ALSQRLSRGF NEAVNGFTDE GWSVIGDSMD  420
DVTITVNSSA DKLMGLNLTF SNGFAPVSNV VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNINAYLAA AVKVGPCSAR VGGFGGQVIL PLAHTIEHEE FMEVIKLEGL GHSPEDAIVP  540
RDIFLLQLCS GMDENAVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS TKEASSPNRT  600
LDLASALEIG PAGTTKASTD QSGNSGTCAR SVMTIAFEFG VESHMQEHVA SIARQYVRGI  660
ISSVQRVALA LSPSHIRSQV GLRTPLGTPE AQTLARWICQ SYRCYMGVEL LKSNGEGNES  720
ILKNLWHHTD AIICCSMKAM PVFTFANQAG LDMLETTLVS LQDITLEKIF DDSGRKTLCS  780
EFPQIMQQGF GSLQGGICIS SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013621760.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ439449	0.0	AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBank	AY060556	0.0	AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013621760.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A0D3BMM6	0.0	A0A0D3BMM6_BRAOL; Uncharacterized protein
STRING	Bo3g181130.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2022	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]