PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621686.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 354aa    MW: 40026.9 Da    PI: 4.5216
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind59.11.2e-18181002102
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k ye+++d++++++isws    nsfv++d++ f+ ++LpkyFkhsn++SF       gF+kv+             eF++++F +g+k+ll+
  XP_013621686.1  18 FLRKCYEMVDDSSTDSVISWSsGADNSFVISDTNVFSAQLLPKYFKHSNLSSF-------GFRKVD------------CEFANDWFVRGRKDLLK 93 
                     9********************6566***************************9.......9*9996............58999************ PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++ r+k+
  XP_013621686.1  94 NVIRRKN 100
                     *999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-20993IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-201398IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-321498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-101841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.8E-161898IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-105769IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVKSSDGVSS SSSSVAPFLR KCYEMVDDSS TDSVISWSSG ADNSFVISDT NVFSAQLLPK  60
YFKHSNLSSF GFRKVDCEFA NDWFVRGRKD LLKNVIRRKN VQSSDHQSKN VSKKQESTCK  120
EDDTEKSELW KEVDILKGDK KALAQELVKV RQYQEVTGTK MLHLEDRVQG MEESQQEMLS  180
FLVMVMQNPS LLVQLLQPKE SSWIKAEGGG GGAKILEEVI DEGESYSSGL PLVTYQQPQS  240
EGTEKSSSSD MNDFLRNADM LKFCLDENHV PLIIPDLYDD GAWEKLLLLS PSKKKNVKKG  300
KDDATLEEEE DETMKVIQEE MERADDFDFG QLTPERSRNL EILTQQIQLL ASNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-1699820129Heat shock factor protein 1
5d5v_B4e-1699820129Heat shock factor protein 1
5d5v_D4e-1699820129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621686.10.0PREDICTED: heat stress transcription factor A-8-like isoform X2
SwissprotQ9S7U51e-180HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D3ANT00.0A0A0D3ANT0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DNU70.0A0A3P6DNU7_BRAOL; Uncharacterized protein
STRINGBo2g056350.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-154heat shock transcription factor A8