PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621685.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 361aa    MW: 40913.9 Da    PI: 4.5604
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.17.5e-30181072102
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k ye+++d++++++isws    nsfv++d++ f+ ++LpkyFkhsn++SFvRQLn+YgF+kv+             eF++++F +g+k+ll+
  XP_013621685.1  18 FLRKCYEMVDDSSTDSVISWSsGADNSFVISDTNVFSAQLLPKYFKHSNLSSFVRQLNIYGFRKVD------------CEFANDWFVRGRKDLLK 100
                     9********************6566***************************************96............5899************* PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++ r+k+
  XP_013621685.1 101 NVIRRKN 107
                     *999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-319100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-2913105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-4514105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2618105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVKSSDGVSS SSSSVAPFLR KCYEMVDDSS TDSVISWSSG ADNSFVISDT NVFSAQLLPK  60
YFKHSNLSSF VRQLNIYGFR KVDCEFANDW FVRGRKDLLK NVIRRKNVQS SDHQSKNVSK  120
KQESTCKEDD TEKSELWKEV DILKGDKKAL AQELVKVRQY QEVTGTKMLH LEDRVQGMEE  180
SQQEMLSFLV MVMQNPSLLV QLLQPKESSW IKAEGGGGGA KILEEVIDEG ESYSSGLPLV  240
TYQQPQSEGT EKSSSSDMND FLRNADMLKF CLDENHVPLI IPDLYDDGAW EKLLLLSPSK  300
KKNVKKGKDD ATLEEEEDET MKVIQEEMER ADDFDFGQLT PERSRNLEIL TQQIQLLASN  360
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23910520129Heat shock factor protein 1
5d5v_B1e-23910520129Heat shock factor protein 1
5d5v_D1e-23910520129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621685.10.0PREDICTED: heat stress transcription factor A-8-like isoform X1
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D3ANT00.0A0A0D3ANT0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DNU70.0A0A3P6DNU7_BRAOL; Uncharacterized protein
STRINGBo2g056350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-162heat shock transcription factor A8