PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013621617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 342aa MW: 37483 Da PI: 5.7062 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27 | 9.6e-09 | 19 | 58 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40 +r C+ +++ + fC+ ++ +lC +C ++H+ H++v XP_013621617.1 19 ARSCDACKSASAAVFCRVDSAFLCITCDASIHSFtrHERV 58 578*****************************65889876 PP | |||||||
2 | zf-B_box | 26.8 | 1.1e-08 | 60 | 103 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ C+ + lC +C + +H+ H++vp+ XP_013621617.1 60 ICEVCEQAPAAVTCKADAASLCVTCDSDIHSAnplasrHERVPV 103 8*****************************66999999999986 PP | |||||||
3 | CCT | 70.1 | 5.8e-24 | 274 | 317 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ XP_013621617.1 274 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 317 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.907 | 17 | 60 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.9E-8 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.57E-8 | 20 | 58 | No hit | No description |
Pfam | PF00643 | 4.2E-7 | 20 | 58 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.708 | 56 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.15E-8 | 60 | 103 | No hit | No description |
Pfam | PF00643 | 2.3E-6 | 60 | 103 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.9E-10 | 61 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.2E-18 | 274 | 316 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.817 | 274 | 316 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGFGLESIKP LSGGWGAAAR SCDACKSASA AVFCRVDSAF LCITCDASIH SFTRHERVYI 60 CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER VPVESFFDAA VAKISPSTFG 120 VLGDSTTVDL TAVPAMGNAD ELGLCPWLIP NDFNEPAKIE TGAELKSSEF MFSDFDRLID 180 FEYPNTFGAD SLVPVQTKTE PLPVTNNDHC FDIDFCRSKL STFTYPTQSI SHSVSTSSLE 240 YGVVPDGTTS VPFNRRTITT STATTGEQPS SMDREARVLR YREKRKNRKF EKTIRYASRK 300 AYAESRPRIK GRFAKRTETE NDDVFFSQVY ASAGQYGVVP TF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013621617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189479 | 1e-148 | AC189479.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB081M20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621617.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 0.0 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A3N6RM89 | 0.0 | A0A3N6RM89_BRACR; Uncharacterized protein | ||||
STRING | Bo2g030190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7899 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 0.0 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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