PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013621558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 404aa MW: 44852.7 Da PI: 5.9872 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.3e-08 | 341 | 374 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_013621558.1 341 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 374 469*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.6e-10 | 295 | 316 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_013621558.1 295 ELKHELKQGYKEKIVDIREEIL 316 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.7E-18 | 128 | 172 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.6E-17 | 131 | 171 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.0E-29 | 183 | 238 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-21 | 187 | 237 | IPR005541 | KNOX2 |
Pfam | PF03789 | 9.3E-7 | 295 | 316 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 295 | 316 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 295 | 315 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 315 | 378 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-11 | 317 | 382 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-16 | 317 | 381 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.12E-11 | 318 | 379 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 322 | 379 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 335 | 374 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAFHHNHLSQ DLSFNHFTDQ DGPPPPPPQQ QQHFHDPPPP NWLNTALLRS DNNNNFLNLH 60 TSAATTSDSP SSAAANQWLP RSSSILQRTE NNNSSGAAVV IDEGGAETMI GGENKNDGGG 120 GAVSWQNARQ KAEILSHPLY EQLLSAHVAC LRTATPVDQL PRIDAQLAQS QNVVAQYSAL 180 GAGQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS 240 PGEGTGATMS DDEDEQQVES DANMFDGGGG LDVLGFGPLV PTESERSLME RVRQELKHEL 300 KQGYKEKIVD IREEILRKRR AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ 360 LKQINNWFIN QRKRNWHSNP SSSTVLKNKR KNNAGDSSGR ERFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 318 | 382 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013621558.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352966 | 0.0 | AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621558.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A3P6DTB9 | 0.0 | A0A3P6DTB9_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g158910.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 0.0 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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