PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621549.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 305aa    MW: 33556.1 Da    PI: 5.8528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-144392255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L +++ Y+++Lq
  XP_013621549.1 43 RSKHSLTEQRRRSKINERFQVLRELIPNS----EQKRDTASFLLEVIGYVQYLQ 92
                    889*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-1839112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-2141114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8024191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-134396No hitNo description
PfamPF000101.1E-114392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-114797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRTGKGNQEE EDYGGEEDLG SKREGSSSAS RDAKDNDKAS AVRSKHSLTE QRRRSKINER  60
FQVLRELIPN SEQKRDTASF LLEVIGYVQY LQEKVQKYEG SYPGWSQEPT KLTPWRNNHW  120
RVQSLASHPV AVNNVSAPVI PFPGKFEEIT VASAPATVAE LQNPVECDKG RAIASKSIDS  180
QAELDDKGLP PLQPIHPLAH SEQVNNECPA TSDGQGPSDD LVIESGTISI STVYSHELLS  240
SLTQALQNAG IDLSHAKLSV QIDLGKRANP SNKNLLTSDI EGATRSRNPG VEEDSEHSHK  300
RMRTL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621549.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526890.0AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621549.10.0PREDICTED: transcription factor BIM2-like isoform X2
SwissprotQ9CAA41e-161BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D3AP560.0A0A0D3AP56_BRAOL; Uncharacterized protein
STRINGBo2g062560.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-155BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]