PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621406.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 322aa    MW: 35478.4 Da    PI: 4.8763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19114164155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  ++ a+ +l+g
  XP_013621406.1 114 KKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFNTAEEAALVYDSAAIQLRG 164
                     59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-33114174No hitNo description
Gene3DG3DSA:3.30.730.103.6E-31115173IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-22115173IPR016177DNA-binding domain
PROSITE profilePS5103224.329115172IPR001471AP2/ERF domain
SMARTSM003809.9E-40115178IPR001471AP2/ERF domain
PfamPF008472.1E-12115164IPR001471AP2/ERF domain
PRINTSPR003671.2E-10116127IPR001471AP2/ERF domain
PRINTSPR003671.2E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDTEKQLVLP KIKFAEHKTN TIPELTTNHH QPRILRISVA DPDATDSSSD EEEEEEQRLA  60
SKRRRIKKFV NEVVLDTGAS GCSSQIESKK RRKRAVTVKS EPASPPAVAT TTEKKYRGVR  120
QRPWGKWAAE IRDPLRRVRL WLGTFNTAEE AALVYDSAAI QLRGPDALTN FPTTENKSSS  180
PPPSPVKRKR KIKDDVASSS TSSDGLCSPV SVLRSPFAVD ETSGSSTPTA AVIVKEEPST  240
TTASETFSDF SAPLFTDEDL FDFRSSVVPD YLGGDLFGED LFADTCTDMN LGFDFGSGLS  300
DWHVDDHFQD IGDLFGSDPM TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22114172160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-22114176467ATERF1
3gcc_A8e-22114176467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165KRRRI
28892KKRRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621406.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621406.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUQ21e-152CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A0D3A5Q80.0A0A0D3A5Q8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FV720.0A0A3P6FV72_BRAOL; Uncharacterized protein
STRINGBo1g037170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-153cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]